Hb_001512_130

Information

Type -
Description -
Location Contig1512: 138456-141761
Sequence    

Annotation

kegg
ID rcu:RCOM_0532170
description hypothetical protein
nr
ID XP_012071647.1
description PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
swissprot
ID Q9SS87
description Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana GN=SEOB PE=1 SV=1
trembl
ID A0A067LGB7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10223 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12811: 138469-139541 , PASA_asmbl_12812: 139543-141816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001512_130 0.0 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
2 Hb_015561_010 0.0575254072 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002062_010 0.0610803959 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
4 Hb_000017_180 0.0744194725 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
5 Hb_136408_040 0.0756236014 - - PREDICTED: protein NDR1 [Jatropha curcas]
6 Hb_005656_120 0.0781792862 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
7 Hb_009023_010 0.0787793936 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
8 Hb_005295_020 0.0797793957 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
9 Hb_000270_380 0.0831095842 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
10 Hb_000364_090 0.0852494031 - - PREDICTED: filament-like plant protein 7 isoform X2 [Jatropha curcas]
11 Hb_001699_080 0.0882929878 - - unnamed protein product [Coffea canephora]
12 Hb_005183_050 0.0885282831 - - hypothetical protein RCOM_1590900 [Ricinus communis]
13 Hb_007163_110 0.0902487418 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
14 Hb_012484_050 0.090374818 - - PREDICTED: kinesin KP1 [Jatropha curcas]
15 Hb_006242_050 0.0925688924 - - Osmotin precursor, putative [Ricinus communis]
16 Hb_003152_020 0.0926300723 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
17 Hb_000031_180 0.0936882186 - - sarcosine oxidase, putative [Ricinus communis]
18 Hb_003417_050 0.0938619283 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_128986_010 0.094404983 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001486_280 0.0948317189 - - hypothetical protein RCOM_1321910 [Ricinus communis]

Gene co-expression network

sample Hb_001512_130 Hb_001512_130 Hb_015561_010 Hb_015561_010 Hb_001512_130--Hb_015561_010 Hb_002062_010 Hb_002062_010 Hb_001512_130--Hb_002062_010 Hb_000017_180 Hb_000017_180 Hb_001512_130--Hb_000017_180 Hb_136408_040 Hb_136408_040 Hb_001512_130--Hb_136408_040 Hb_005656_120 Hb_005656_120 Hb_001512_130--Hb_005656_120 Hb_009023_010 Hb_009023_010 Hb_001512_130--Hb_009023_010 Hb_015561_010--Hb_002062_010 Hb_002119_100 Hb_002119_100 Hb_015561_010--Hb_002119_100 Hb_015561_010--Hb_009023_010 Hb_003417_050 Hb_003417_050 Hb_015561_010--Hb_003417_050 Hb_007483_090 Hb_007483_090 Hb_015561_010--Hb_007483_090 Hb_128986_010 Hb_128986_010 Hb_002062_010--Hb_128986_010 Hb_002062_010--Hb_000017_180 Hb_002062_010--Hb_005656_120 Hb_002062_010--Hb_003417_050 Hb_002062_010--Hb_002119_100 Hb_005183_050 Hb_005183_050 Hb_000017_180--Hb_005183_050 Hb_000017_180--Hb_003417_050 Hb_000017_180--Hb_005656_120 Hb_000017_180--Hb_128986_010 Hb_000017_180--Hb_007483_090 Hb_003152_020 Hb_003152_020 Hb_136408_040--Hb_003152_020 Hb_007163_110 Hb_007163_110 Hb_136408_040--Hb_007163_110 Hb_136408_040--Hb_002062_010 Hb_136408_040--Hb_000017_180 Hb_000076_240 Hb_000076_240 Hb_136408_040--Hb_000076_240 Hb_005656_120--Hb_003417_050 Hb_005656_120--Hb_128986_010 Hb_005656_120--Hb_015561_010 Hb_005656_120--Hb_007163_110 Hb_000270_380 Hb_000270_380 Hb_009023_010--Hb_000270_380 Hb_005762_010 Hb_005762_010 Hb_009023_010--Hb_005762_010 Hb_009023_010--Hb_002062_010 Hb_012098_160 Hb_012098_160 Hb_009023_010--Hb_012098_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0885504 2.44684 9.84805 24.7415 0.322837 0.235291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.10837 21.8108

CAGE analysis