Hb_003417_050

Information

Type -
Description -
Location Contig3417: 48202-53251
Sequence    

Annotation

kegg
ID rcu:RCOM_1678490
description ankyrin repeat-containing protein, putative
nr
ID XP_002509549.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q01484
description Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4
trembl
ID B9RBL5
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1678490 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35722: 47820-53427
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003417_050 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_128986_010 0.0484070101 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007483_090 0.04932687 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002062_010 0.0590476597 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
5 Hb_002119_100 0.0596970477 - - cytochrome B561, putative [Ricinus communis]
6 Hb_005656_120 0.0623220217 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
7 Hb_143629_170 0.0626334088 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
8 Hb_006242_050 0.0646654572 - - Osmotin precursor, putative [Ricinus communis]
9 Hb_000017_180 0.0655921003 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
10 Hb_015561_010 0.0680087322 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002740_050 0.0750570979 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
12 Hb_052530_020 0.0815107965 - - cytochrome B5 isoform 1, putative [Ricinus communis]
13 Hb_000031_180 0.0821273273 - - sarcosine oxidase, putative [Ricinus communis]
14 Hb_002150_090 0.0852149706 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
15 Hb_000329_780 0.0857600622 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
16 Hb_004459_010 0.085819086 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
17 Hb_000103_200 0.0859502395 - - calmodulin binding protein, putative [Ricinus communis]
18 Hb_000599_150 0.0862280803 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
19 Hb_001278_120 0.0877986058 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
20 Hb_009023_010 0.0885756842 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_003417_050 Hb_003417_050 Hb_128986_010 Hb_128986_010 Hb_003417_050--Hb_128986_010 Hb_007483_090 Hb_007483_090 Hb_003417_050--Hb_007483_090 Hb_002062_010 Hb_002062_010 Hb_003417_050--Hb_002062_010 Hb_002119_100 Hb_002119_100 Hb_003417_050--Hb_002119_100 Hb_005656_120 Hb_005656_120 Hb_003417_050--Hb_005656_120 Hb_143629_170 Hb_143629_170 Hb_003417_050--Hb_143629_170 Hb_128986_010--Hb_002062_010 Hb_128986_010--Hb_143629_170 Hb_001278_120 Hb_001278_120 Hb_128986_010--Hb_001278_120 Hb_128986_010--Hb_005656_120 Hb_128986_010--Hb_007483_090 Hb_007483_090--Hb_002119_100 Hb_000329_780 Hb_000329_780 Hb_007483_090--Hb_000329_780 Hb_007483_090--Hb_002062_010 Hb_015561_010 Hb_015561_010 Hb_007483_090--Hb_015561_010 Hb_002062_010--Hb_015561_010 Hb_000017_180 Hb_000017_180 Hb_002062_010--Hb_000017_180 Hb_002062_010--Hb_005656_120 Hb_002062_010--Hb_002119_100 Hb_002119_100--Hb_000329_780 Hb_002740_050 Hb_002740_050 Hb_002119_100--Hb_002740_050 Hb_002119_100--Hb_015561_010 Hb_005656_120--Hb_000017_180 Hb_005656_120--Hb_015561_010 Hb_007163_110 Hb_007163_110 Hb_005656_120--Hb_007163_110 Hb_143629_170--Hb_002740_050 Hb_004943_020 Hb_004943_020 Hb_143629_170--Hb_004943_020 Hb_006242_050 Hb_006242_050 Hb_143629_170--Hb_006242_050 Hb_003855_060 Hb_003855_060 Hb_143629_170--Hb_003855_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.815679 6.09462 13.1626 0 0.0153508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0184621 0.0290548 0 0.28276 10.7052

CAGE analysis