Hb_004943_020

Information

Type -
Description -
Location Contig4943: 36518-43479
Sequence    

Annotation

kegg
ID rcu:RCOM_1092970
description cationic amino acid transporter, putative
nr
ID XP_002526614.1
description cationic amino acid transporter, putative [Ricinus communis]
swissprot
ID Q84MA5
description Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1
trembl
ID B9SKU5
description Cationic amino acid transporter, putative OS=Ricinus communis GN=RCOM_1092970 PE=4 SV=1
Gene Ontology
ID GO:0005737
description cationic amino acid transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45417: 17226-37275 , PASA_asmbl_45418: 37800-43826
cDNA
(Sanger)
(ID:Location)		 023_P06.ab1: 43132-43826

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004943_020 0.0 - - cationic amino acid transporter, putative [Ricinus communis]
2 Hb_001278_120 0.0437098292 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
3 Hb_003855_060 0.0516264736 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
4 Hb_000343_070 0.0550498682 - - hypothetical protein JCGZ_06265 [Jatropha curcas]
5 Hb_143629_170 0.0590664565 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
6 Hb_007904_150 0.0739263922 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
7 Hb_004459_010 0.074019061 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
8 Hb_005269_060 0.0749861326 - - PREDICTED: rac-like GTP-binding protein RAC2 [Cicer arietinum]
9 Hb_002740_050 0.0761942279 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
10 Hb_128986_010 0.0764789924 - - conserved hypothetical protein [Ricinus communis]
11 Hb_061256_020 0.0766139997 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
12 Hb_001981_050 0.0791802064 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
13 Hb_000326_120 0.0793692901 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
14 Hb_049955_010 0.0794841658 - - hypothetical protein EUGRSUZ_B00742 [Eucalyptus grandis]
15 Hb_024723_010 0.0865598454 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
16 Hb_149694_010 0.086887964 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
17 Hb_000111_490 0.087901629 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000057_090 0.0900193409 - - hypothetical protein RCOM_1494490 [Ricinus communis]
19 Hb_000318_310 0.0915072954 - - hypothetical protein POPTR_0009s11190g [Populus trichocarpa]
20 Hb_000485_100 0.0930823002 - - PREDICTED: putative UPF0481 protein At3g02645 [Populus euphratica]

Gene co-expression network

sample Hb_004943_020 Hb_004943_020 Hb_001278_120 Hb_001278_120 Hb_004943_020--Hb_001278_120 Hb_003855_060 Hb_003855_060 Hb_004943_020--Hb_003855_060 Hb_000343_070 Hb_000343_070 Hb_004943_020--Hb_000343_070 Hb_143629_170 Hb_143629_170 Hb_004943_020--Hb_143629_170 Hb_007904_150 Hb_007904_150 Hb_004943_020--Hb_007904_150 Hb_004459_010 Hb_004459_010 Hb_004943_020--Hb_004459_010 Hb_001278_120--Hb_000343_070 Hb_001278_120--Hb_004459_010 Hb_128986_010 Hb_128986_010 Hb_001278_120--Hb_128986_010 Hb_001278_120--Hb_003855_060 Hb_000326_120 Hb_000326_120 Hb_001278_120--Hb_000326_120 Hb_002740_050 Hb_002740_050 Hb_003855_060--Hb_002740_050 Hb_003855_060--Hb_007904_150 Hb_001981_050 Hb_001981_050 Hb_003855_060--Hb_001981_050 Hb_000318_310 Hb_000318_310 Hb_003855_060--Hb_000318_310 Hb_185811_010 Hb_185811_010 Hb_003855_060--Hb_185811_010 Hb_005269_060 Hb_005269_060 Hb_000343_070--Hb_005269_060 Hb_049955_010 Hb_049955_010 Hb_000343_070--Hb_049955_010 Hb_010172_040 Hb_010172_040 Hb_000343_070--Hb_010172_040 Hb_000707_090 Hb_000707_090 Hb_000343_070--Hb_000707_090 Hb_143629_170--Hb_128986_010 Hb_143629_170--Hb_002740_050 Hb_006242_050 Hb_006242_050 Hb_143629_170--Hb_006242_050 Hb_003417_050 Hb_003417_050 Hb_143629_170--Hb_003417_050 Hb_143629_170--Hb_003855_060 Hb_007904_150--Hb_002740_050 Hb_007904_150--Hb_001981_050 Hb_007904_150--Hb_000318_310 Hb_000915_170 Hb_000915_170 Hb_007904_150--Hb_000915_170 Hb_007904_150--Hb_185811_010 Hb_000917_300 Hb_000917_300 Hb_004459_010--Hb_000917_300 Hb_004459_010--Hb_001981_050 Hb_004459_010--Hb_003855_060 Hb_095744_010 Hb_095744_010 Hb_004459_010--Hb_095744_010 Hb_004459_010--Hb_000318_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0411808 2.79746 6.84165 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.189857 5.63459

CAGE analysis