Hb_001278_120

Information

Type -
Description -
Location Contig1278: 156809-166210
Sequence    

Annotation

kegg
ID rcu:RCOM_1311450
description hypothetical protein
nr
ID XP_012075775.1
description PREDICTED: reticulon-like protein B14 [Jatropha curcas]
swissprot
ID A2RVT6
description Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2
trembl
ID A0A067KFL9
description Reticulon-like protein OS=Jatropha curcas GN=JCGZ_09319 PE=4 SV=1
Gene Ontology
ID GO:0005789
description reticulon-like protein b9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08558: 156751-166152
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001278_120 0.0 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
2 Hb_000343_070 0.0423520551 - - hypothetical protein JCGZ_06265 [Jatropha curcas]
3 Hb_004943_020 0.0437098292 - - cationic amino acid transporter, putative [Ricinus communis]
4 Hb_004459_010 0.0460374731 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
5 Hb_128986_010 0.0631965051 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003855_060 0.0659822639 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
7 Hb_000326_120 0.0697782333 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
8 Hb_143629_170 0.0700800696 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
9 Hb_010172_040 0.0706239066 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
10 Hb_005269_060 0.0720669167 - - PREDICTED: rac-like GTP-binding protein RAC2 [Cicer arietinum]
11 Hb_001981_050 0.0746359071 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
12 Hb_061256_020 0.0751862587 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
13 Hb_002809_180 0.0756501507 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
14 Hb_024723_010 0.0759554293 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
15 Hb_000111_490 0.0797057405 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000485_100 0.0801598069 - - PREDICTED: putative UPF0481 protein At3g02645 [Populus euphratica]
17 Hb_000917_300 0.0809014641 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
18 Hb_002740_050 0.0863315394 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
19 Hb_049955_010 0.0867850698 - - hypothetical protein EUGRSUZ_B00742 [Eucalyptus grandis]
20 Hb_000318_310 0.0870214239 - - hypothetical protein POPTR_0009s11190g [Populus trichocarpa]

Gene co-expression network

sample Hb_001278_120 Hb_001278_120 Hb_000343_070 Hb_000343_070 Hb_001278_120--Hb_000343_070 Hb_004943_020 Hb_004943_020 Hb_001278_120--Hb_004943_020 Hb_004459_010 Hb_004459_010 Hb_001278_120--Hb_004459_010 Hb_128986_010 Hb_128986_010 Hb_001278_120--Hb_128986_010 Hb_003855_060 Hb_003855_060 Hb_001278_120--Hb_003855_060 Hb_000326_120 Hb_000326_120 Hb_001278_120--Hb_000326_120 Hb_000343_070--Hb_004943_020 Hb_005269_060 Hb_005269_060 Hb_000343_070--Hb_005269_060 Hb_049955_010 Hb_049955_010 Hb_000343_070--Hb_049955_010 Hb_010172_040 Hb_010172_040 Hb_000343_070--Hb_010172_040 Hb_000707_090 Hb_000707_090 Hb_000343_070--Hb_000707_090 Hb_004943_020--Hb_003855_060 Hb_143629_170 Hb_143629_170 Hb_004943_020--Hb_143629_170 Hb_007904_150 Hb_007904_150 Hb_004943_020--Hb_007904_150 Hb_004943_020--Hb_004459_010 Hb_000917_300 Hb_000917_300 Hb_004459_010--Hb_000917_300 Hb_001981_050 Hb_001981_050 Hb_004459_010--Hb_001981_050 Hb_004459_010--Hb_003855_060 Hb_095744_010 Hb_095744_010 Hb_004459_010--Hb_095744_010 Hb_000318_310 Hb_000318_310 Hb_004459_010--Hb_000318_310 Hb_002062_010 Hb_002062_010 Hb_128986_010--Hb_002062_010 Hb_003417_050 Hb_003417_050 Hb_128986_010--Hb_003417_050 Hb_128986_010--Hb_143629_170 Hb_005656_120 Hb_005656_120 Hb_128986_010--Hb_005656_120 Hb_007483_090 Hb_007483_090 Hb_128986_010--Hb_007483_090 Hb_002740_050 Hb_002740_050 Hb_003855_060--Hb_002740_050 Hb_003855_060--Hb_007904_150 Hb_003855_060--Hb_001981_050 Hb_003855_060--Hb_000318_310 Hb_185811_010 Hb_185811_010 Hb_003855_060--Hb_185811_010 Hb_024723_010 Hb_024723_010 Hb_000326_120--Hb_024723_010 Hb_000111_490 Hb_000111_490 Hb_000326_120--Hb_000111_490 Hb_000485_100 Hb_000485_100 Hb_000326_120--Hb_000485_100 Hb_000326_120--Hb_000343_070 Hb_002391_010 Hb_002391_010 Hb_000326_120--Hb_002391_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.110821 3.04369 8.18984 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0878555 6.62977

CAGE analysis