Hb_007904_150

Information

Type -
Description -
Location Contig7904: 82449-84384
Sequence    

Annotation

kegg
ID vvi:100242302
description probable pectate lyase 5
nr
ID XP_011029589.1
description PREDICTED: probable pectate lyase 5 [Populus euphratica]
swissprot
ID Q9FXD8
description Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2
trembl
ID Q93XJ1
description Pectate lyase OS=Salix gilgiana GN=SgPL1 PE=2 SV=1
Gene Ontology
ID GO:0030570
description probable pectate lyase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58324: 82432-84598
cDNA
(Sanger)
(ID:Location)		 012_G20.ab1: 82432-83309 , 014_B06.ab1: 82432-83311 , 024_F20.ab1: 82432-83311 , 039_A05.ab1: 82432-83291

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_150 0.0 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
2 Hb_003855_060 0.0453429082 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
3 Hb_002740_050 0.0565381896 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
4 Hb_001981_050 0.0620646682 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
5 Hb_000318_310 0.0690749786 - - hypothetical protein POPTR_0009s11190g [Populus trichocarpa]
6 Hb_000915_170 0.0696671383 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
7 Hb_185811_010 0.0732801535 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
8 Hb_004943_020 0.0739263922 - - cationic amino acid transporter, putative [Ricinus communis]
9 Hb_149694_010 0.0841472039 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
10 Hb_143629_170 0.0844895877 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
11 Hb_003911_050 0.0885259444 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
12 Hb_001278_120 0.0899449682 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
13 Hb_000358_260 0.0907805138 - - PREDICTED: lachrymatory-factor synthase-like [Vitis vinifera]
14 Hb_004459_010 0.0909563437 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
15 Hb_006816_380 0.0914813223 - - PREDICTED: kinesin-4-like [Jatropha curcas]
16 Hb_000326_120 0.0937080214 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
17 Hb_002119_100 0.0963741312 - - cytochrome B561, putative [Ricinus communis]
18 Hb_004032_280 0.0967103124 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
19 Hb_006588_140 0.0976729333 - - PREDICTED: uncharacterized protein LOC104906772 [Beta vulgaris subsp. vulgaris]
20 Hb_000057_090 0.0979445468 - - hypothetical protein RCOM_1494490 [Ricinus communis]

Gene co-expression network

sample Hb_007904_150 Hb_007904_150 Hb_003855_060 Hb_003855_060 Hb_007904_150--Hb_003855_060 Hb_002740_050 Hb_002740_050 Hb_007904_150--Hb_002740_050 Hb_001981_050 Hb_001981_050 Hb_007904_150--Hb_001981_050 Hb_000318_310 Hb_000318_310 Hb_007904_150--Hb_000318_310 Hb_000915_170 Hb_000915_170 Hb_007904_150--Hb_000915_170 Hb_185811_010 Hb_185811_010 Hb_007904_150--Hb_185811_010 Hb_003855_060--Hb_002740_050 Hb_003855_060--Hb_001981_050 Hb_004943_020 Hb_004943_020 Hb_003855_060--Hb_004943_020 Hb_003855_060--Hb_000318_310 Hb_003855_060--Hb_185811_010 Hb_143629_170 Hb_143629_170 Hb_002740_050--Hb_143629_170 Hb_002119_100 Hb_002119_100 Hb_002740_050--Hb_002119_100 Hb_149694_010 Hb_149694_010 Hb_002740_050--Hb_149694_010 Hb_000329_780 Hb_000329_780 Hb_002740_050--Hb_000329_780 Hb_001981_050--Hb_185811_010 Hb_001981_050--Hb_000318_310 Hb_004459_010 Hb_004459_010 Hb_001981_050--Hb_004459_010 Hb_000917_300 Hb_000917_300 Hb_001981_050--Hb_000917_300 Hb_000318_310--Hb_185811_010 Hb_000318_310--Hb_000917_300 Hb_000318_310--Hb_004459_010 Hb_006816_380 Hb_006816_380 Hb_000915_170--Hb_006816_380 Hb_000358_260 Hb_000358_260 Hb_000915_170--Hb_000358_260 Hb_000915_170--Hb_001981_050 Hb_000915_170--Hb_002740_050 Hb_000915_170--Hb_185811_010 Hb_001345_050 Hb_001345_050 Hb_185811_010--Hb_001345_050 Hb_072771_010 Hb_072771_010 Hb_185811_010--Hb_072771_010 Hb_004807_010 Hb_004807_010 Hb_185811_010--Hb_004807_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.161779 0.361426 36.1395 61.1787 0.0608514 0.204024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0567916 0.0223407 0.0842018 1.354 58.3813

CAGE analysis