Hb_002740_050

Information

Type transcription factor
Description TF Family: MYB
Location Contig2740: 127736-129570
Sequence    

Annotation

kegg
ID pop:POPTR_0005s00340g
description myb family transcription factor family protein
nr
ID XP_011039057.1
description PREDICTED: transcription factor MYB86-like [Populus euphratica]
swissprot
ID Q8LPH6
description Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1
trembl
ID B9N405
description Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0005s00340g PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb86-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28667: 127666-129536
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002740_050 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
2 Hb_003855_060 0.0415807593 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
3 Hb_007904_150 0.0565381896 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
4 Hb_143629_170 0.0587018027 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
5 Hb_002119_100 0.064377443 - - cytochrome B561, putative [Ricinus communis]
6 Hb_149694_010 0.0695639937 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
7 Hb_000329_780 0.0700922219 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
8 Hb_001981_050 0.071628931 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
9 Hb_128986_010 0.0720275873 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006242_050 0.0741912605 - - Osmotin precursor, putative [Ricinus communis]
11 Hb_003417_050 0.0750570979 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_007483_090 0.0756066562 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004943_020 0.0761942279 - - cationic amino acid transporter, putative [Ricinus communis]
14 Hb_000928_030 0.0766138535 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
15 Hb_000915_170 0.0768570166 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
16 Hb_006831_090 0.0799046094 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
17 Hb_004032_280 0.0802414824 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
18 Hb_000318_310 0.0820011282 - - hypothetical protein POPTR_0009s11190g [Populus trichocarpa]
19 Hb_052530_020 0.0827663659 - - cytochrome B5 isoform 1, putative [Ricinus communis]
20 Hb_002600_170 0.0840445027 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002740_050 Hb_002740_050 Hb_003855_060 Hb_003855_060 Hb_002740_050--Hb_003855_060 Hb_007904_150 Hb_007904_150 Hb_002740_050--Hb_007904_150 Hb_143629_170 Hb_143629_170 Hb_002740_050--Hb_143629_170 Hb_002119_100 Hb_002119_100 Hb_002740_050--Hb_002119_100 Hb_149694_010 Hb_149694_010 Hb_002740_050--Hb_149694_010 Hb_000329_780 Hb_000329_780 Hb_002740_050--Hb_000329_780 Hb_003855_060--Hb_007904_150 Hb_001981_050 Hb_001981_050 Hb_003855_060--Hb_001981_050 Hb_004943_020 Hb_004943_020 Hb_003855_060--Hb_004943_020 Hb_000318_310 Hb_000318_310 Hb_003855_060--Hb_000318_310 Hb_185811_010 Hb_185811_010 Hb_003855_060--Hb_185811_010 Hb_007904_150--Hb_001981_050 Hb_007904_150--Hb_000318_310 Hb_000915_170 Hb_000915_170 Hb_007904_150--Hb_000915_170 Hb_007904_150--Hb_185811_010 Hb_128986_010 Hb_128986_010 Hb_143629_170--Hb_128986_010 Hb_143629_170--Hb_004943_020 Hb_006242_050 Hb_006242_050 Hb_143629_170--Hb_006242_050 Hb_003417_050 Hb_003417_050 Hb_143629_170--Hb_003417_050 Hb_143629_170--Hb_003855_060 Hb_007483_090 Hb_007483_090 Hb_002119_100--Hb_007483_090 Hb_002119_100--Hb_000329_780 Hb_002062_010 Hb_002062_010 Hb_002119_100--Hb_002062_010 Hb_002119_100--Hb_003417_050 Hb_015561_010 Hb_015561_010 Hb_002119_100--Hb_015561_010 Hb_149694_010--Hb_003855_060 Hb_149694_010--Hb_143629_170 Hb_149694_010--Hb_007904_150 Hb_149694_010--Hb_004943_020 Hb_052530_020 Hb_052530_020 Hb_149694_010--Hb_052530_020 Hb_006831_090 Hb_006831_090 Hb_000329_780--Hb_006831_090 Hb_002600_170 Hb_002600_170 Hb_000329_780--Hb_002600_170 Hb_002374_180 Hb_002374_180 Hb_000329_780--Hb_002374_180 Hb_008536_020 Hb_008536_020 Hb_000329_780--Hb_008536_020 Hb_000031_180 Hb_000031_180 Hb_000329_780--Hb_000031_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0476535 0.66843 14.9199 25.0723 0.0111551 0.0117045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.765026 23.001

CAGE analysis