Hb_052530_020

Information

Type -
Description -
Location Contig52530: 29172-30298
Sequence    

Annotation

kegg
ID rcu:RCOM_0144390
description cytochrome B5 isoform 1, putative (EC:1.7.1.1)
nr
ID XP_002533333.1
description cytochrome B5 isoform 1, putative [Ricinus communis]
swissprot
ID P40934
description Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1
trembl
ID B9T514
description Cytochrome B5 isoform 1, putative OS=Ricinus communis GN=RCOM_0144390 PE=3 SV=1
Gene Ontology
ID GO:0009703
description cytochrome b5 isoform e

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46977: 29437-30285
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052530_020 0.0 - - cytochrome B5 isoform 1, putative [Ricinus communis]
2 Hb_000928_030 0.0651909273 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
3 Hb_004137_040 0.0671594168 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
4 Hb_000599_150 0.0676675589 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
5 Hb_002150_090 0.0686690794 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
6 Hb_000028_190 0.0778900493 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
7 Hb_000103_200 0.078834859 - - calmodulin binding protein, putative [Ricinus communis]
8 Hb_003417_050 0.0815107965 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_002119_100 0.0824388878 - - cytochrome B561, putative [Ricinus communis]
10 Hb_002740_050 0.0827663659 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
11 Hb_006816_380 0.0845101204 - - PREDICTED: kinesin-4-like [Jatropha curcas]
12 Hb_149694_010 0.0874092632 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
13 Hb_000684_070 0.0880550836 - - PREDICTED: uncharacterized protein LOC105642198 isoform X1 [Jatropha curcas]
14 Hb_000617_360 0.0883315923 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004032_280 0.088744627 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
16 Hb_007483_090 0.0889457562 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012395_240 0.0908519188 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
18 Hb_000915_170 0.0931721855 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
19 Hb_002066_110 0.0942072682 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
20 Hb_000329_780 0.0949339769 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]

Gene co-expression network

sample Hb_052530_020 Hb_052530_020 Hb_000928_030 Hb_000928_030 Hb_052530_020--Hb_000928_030 Hb_004137_040 Hb_004137_040 Hb_052530_020--Hb_004137_040 Hb_000599_150 Hb_000599_150 Hb_052530_020--Hb_000599_150 Hb_002150_090 Hb_002150_090 Hb_052530_020--Hb_002150_090 Hb_000028_190 Hb_000028_190 Hb_052530_020--Hb_000028_190 Hb_000103_200 Hb_000103_200 Hb_052530_020--Hb_000103_200 Hb_000928_030--Hb_000028_190 Hb_000928_030--Hb_004137_040 Hb_002221_060 Hb_002221_060 Hb_000928_030--Hb_002221_060 Hb_000928_030--Hb_000103_200 Hb_000358_260 Hb_000358_260 Hb_000928_030--Hb_000358_260 Hb_004137_040--Hb_000028_190 Hb_000483_450 Hb_000483_450 Hb_004137_040--Hb_000483_450 Hb_004137_040--Hb_002221_060 Hb_000230_300 Hb_000230_300 Hb_004137_040--Hb_000230_300 Hb_004137_040--Hb_000103_200 Hb_004032_280 Hb_004032_280 Hb_000599_150--Hb_004032_280 Hb_000031_180 Hb_000031_180 Hb_000599_150--Hb_000031_180 Hb_000329_780 Hb_000329_780 Hb_000599_150--Hb_000329_780 Hb_002572_040 Hb_002572_040 Hb_000599_150--Hb_002572_040 Hb_007483_090 Hb_007483_090 Hb_000599_150--Hb_007483_090 Hb_002150_090--Hb_000028_190 Hb_001095_020 Hb_001095_020 Hb_002150_090--Hb_001095_020 Hb_007163_100 Hb_007163_100 Hb_002150_090--Hb_007163_100 Hb_008054_030 Hb_008054_030 Hb_002150_090--Hb_008054_030 Hb_002066_110 Hb_002066_110 Hb_002150_090--Hb_002066_110 Hb_001674_010 Hb_001674_010 Hb_002150_090--Hb_001674_010 Hb_000028_190--Hb_000483_450 Hb_000028_190--Hb_001674_010 Hb_000028_190--Hb_008054_030 Hb_000103_200--Hb_000230_300 Hb_000103_200--Hb_002221_060 Hb_005762_010 Hb_005762_010 Hb_000103_200--Hb_005762_010 Hb_000103_200--Hb_000028_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.13578 15.0806 21.7414 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.206561 0.162334 0 0.366484 18.4896

CAGE analysis