Hb_004137_040

Information

Type -
Description -
Location Contig4137: 24084-27834
Sequence    

Annotation

kegg
ID pop:POPTR_0002s07260g
description POPTRDRAFT_551354; serine carboxypeptidase S10 family protein
nr
ID XP_012066078.1
description PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
swissprot
ID Q9FH05
description Serine carboxypeptidase-like 42 OS=Arabidopsis thaliana GN=SCPL42 PE=2 SV=1
trembl
ID A0A067L715
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25229 PE=4 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 42

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40972: 23778-28118
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004137_040 0.0 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
2 Hb_000028_190 0.0469854656 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
3 Hb_000483_450 0.053427533 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
4 Hb_002221_060 0.0577538153 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
5 Hb_000928_030 0.0625555124 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
6 Hb_000230_300 0.0632070543 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
7 Hb_000103_200 0.0657361799 - - calmodulin binding protein, putative [Ricinus communis]
8 Hb_000003_380 0.0668957458 - - conserved hypothetical protein [Ricinus communis]
9 Hb_052530_020 0.0671594168 - - cytochrome B5 isoform 1, putative [Ricinus communis]
10 Hb_002150_090 0.0723290706 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
11 Hb_001545_020 0.0735144433 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X5 [Populus euphratica]
12 Hb_008054_030 0.073954338 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
13 Hb_005762_010 0.0746513897 - - PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]
14 Hb_003339_010 0.0747193799 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
15 Hb_004202_020 0.0784372412 - - conserved hypothetical protein [Ricinus communis]
16 Hb_017434_010 0.083540628 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
17 Hb_001095_020 0.0844797443 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
18 Hb_001674_010 0.084671125 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
19 Hb_000392_110 0.0848355963 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
20 Hb_032920_020 0.0860692055 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004137_040 Hb_004137_040 Hb_000028_190 Hb_000028_190 Hb_004137_040--Hb_000028_190 Hb_000483_450 Hb_000483_450 Hb_004137_040--Hb_000483_450 Hb_002221_060 Hb_002221_060 Hb_004137_040--Hb_002221_060 Hb_000928_030 Hb_000928_030 Hb_004137_040--Hb_000928_030 Hb_000230_300 Hb_000230_300 Hb_004137_040--Hb_000230_300 Hb_000103_200 Hb_000103_200 Hb_004137_040--Hb_000103_200 Hb_002150_090 Hb_002150_090 Hb_000028_190--Hb_002150_090 Hb_000028_190--Hb_000483_450 Hb_001674_010 Hb_001674_010 Hb_000028_190--Hb_001674_010 Hb_008054_030 Hb_008054_030 Hb_000028_190--Hb_008054_030 Hb_000028_190--Hb_000928_030 Hb_004202_020 Hb_004202_020 Hb_000483_450--Hb_004202_020 Hb_000483_450--Hb_002221_060 Hb_003894_110 Hb_003894_110 Hb_000483_450--Hb_003894_110 Hb_000392_110 Hb_000392_110 Hb_000483_450--Hb_000392_110 Hb_000003_380 Hb_000003_380 Hb_002221_060--Hb_000003_380 Hb_002221_060--Hb_000230_300 Hb_002221_060--Hb_000103_200 Hb_002221_060--Hb_000928_030 Hb_052530_020 Hb_052530_020 Hb_000928_030--Hb_052530_020 Hb_000928_030--Hb_000103_200 Hb_000358_260 Hb_000358_260 Hb_000928_030--Hb_000358_260 Hb_000230_300--Hb_000003_380 Hb_005762_010 Hb_005762_010 Hb_000230_300--Hb_005762_010 Hb_000230_300--Hb_000103_200 Hb_000230_300--Hb_000028_190 Hb_000103_200--Hb_005762_010 Hb_000103_200--Hb_000028_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.32565 14.551 20.9696 0.012385 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0602388 0.0236961 0 0.245818 13.5015

CAGE analysis