Hb_004202_020

Information

Type -
Description -
Location Contig4202: 14504-20330
Sequence    

Annotation

kegg
ID rcu:RCOM_0664340
description hypothetical protein
nr
ID XP_002533313.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9VE61
description E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster GN=CG7694 PE=2 SV=1
trembl
ID B9T4Z4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0664340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41504: 14670-14774
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004202_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000483_450 0.0487285887 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
3 Hb_001047_090 0.0608111428 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]
4 Hb_040852_010 0.0609741819 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003894_110 0.0613776997 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
6 Hb_000392_110 0.0659902638 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
7 Hb_003376_020 0.0681988085 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_152910_050 0.0684769302 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
9 Hb_010883_170 0.0725453662 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
10 Hb_011618_110 0.0767124224 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
11 Hb_000103_450 0.0778933761 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
12 Hb_004137_040 0.0784372412 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
13 Hb_000003_370 0.0786827546 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
14 Hb_002221_060 0.0800108891 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
15 Hb_098315_060 0.0801901785 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
16 Hb_012653_050 0.0836341631 - - hypothetical protein RCOM_0460020 [Ricinus communis]
17 Hb_000003_380 0.0840153588 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001545_020 0.0889576616 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X5 [Populus euphratica]
19 Hb_000028_190 0.0892822887 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
20 Hb_010962_020 0.0898010355 transcription factor TF Family: OFP hypothetical protein RCOM_0815310 [Ricinus communis]

Gene co-expression network

sample Hb_004202_020 Hb_004202_020 Hb_000483_450 Hb_000483_450 Hb_004202_020--Hb_000483_450 Hb_001047_090 Hb_001047_090 Hb_004202_020--Hb_001047_090 Hb_040852_010 Hb_040852_010 Hb_004202_020--Hb_040852_010 Hb_003894_110 Hb_003894_110 Hb_004202_020--Hb_003894_110 Hb_000392_110 Hb_000392_110 Hb_004202_020--Hb_000392_110 Hb_003376_020 Hb_003376_020 Hb_004202_020--Hb_003376_020 Hb_004137_040 Hb_004137_040 Hb_000483_450--Hb_004137_040 Hb_000028_190 Hb_000028_190 Hb_000483_450--Hb_000028_190 Hb_002221_060 Hb_002221_060 Hb_000483_450--Hb_002221_060 Hb_000483_450--Hb_003894_110 Hb_000483_450--Hb_000392_110 Hb_010962_020 Hb_010962_020 Hb_001047_090--Hb_010962_020 Hb_002902_060 Hb_002902_060 Hb_001047_090--Hb_002902_060 Hb_006846_040 Hb_006846_040 Hb_001047_090--Hb_006846_040 Hb_000103_450 Hb_000103_450 Hb_001047_090--Hb_000103_450 Hb_001047_090--Hb_000392_110 Hb_152910_050 Hb_152910_050 Hb_040852_010--Hb_152910_050 Hb_040852_010--Hb_003894_110 Hb_098315_060 Hb_098315_060 Hb_040852_010--Hb_098315_060 Hb_000134_130 Hb_000134_130 Hb_040852_010--Hb_000134_130 Hb_040852_010--Hb_003376_020 Hb_003894_110--Hb_152910_050 Hb_003894_110--Hb_098315_060 Hb_003894_110--Hb_000134_130 Hb_003894_110--Hb_003376_020 Hb_000878_050 Hb_000878_050 Hb_000392_110--Hb_000878_050 Hb_001117_050 Hb_001117_050 Hb_000392_110--Hb_001117_050 Hb_000392_110--Hb_003894_110 Hb_003376_020--Hb_152910_050 Hb_003376_020--Hb_098315_060 Hb_003376_020--Hb_000134_130 Hb_000103_220 Hb_000103_220 Hb_003376_020--Hb_000103_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0824165 1.02742 1.71947 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0254652 0.72376

CAGE analysis