Hb_006846_040

Information

Type -
Description -
Location Contig6846: 25497-29827
Sequence    

Annotation

kegg
ID rcu:RCOM_1503000
description hypothetical protein
nr
ID XP_012090543.1
description PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RA35
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1503000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54058: 25889-26468
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006846_040 0.0 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
2 Hb_053264_010 0.0624928524 - - beta glucosidase [Hevea brasiliensis]
3 Hb_000103_450 0.0706413108 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
4 Hb_001047_090 0.071540771 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]
5 Hb_138585_010 0.0730629482 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
6 Hb_010962_020 0.078312885 transcription factor TF Family: OFP hypothetical protein RCOM_0815310 [Ricinus communis]
7 Hb_000903_040 0.0837944287 - - PREDICTED: pirin-like protein [Jatropha curcas]
8 Hb_010407_130 0.0842304695 - - hypothetical protein POPTR_0008s16680g [Populus trichocarpa]
9 Hb_000003_280 0.085123657 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010883_170 0.0884223701 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
11 Hb_000392_110 0.092269202 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
12 Hb_143629_170 0.0945972256 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
13 Hb_000140_320 0.0946219271 - - delta-8 sphingolipid desaturase [Vernicia fordii]
14 Hb_004202_020 0.0949389854 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000483_450 0.0964768381 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
16 Hb_002471_130 0.0965997873 - - PREDICTED: probable transmembrane ascorbate ferrireductase 3 [Jatropha curcas]
17 Hb_002311_030 0.0976131944 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001898_040 0.1022984603 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
19 Hb_085962_010 0.1029923977 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
20 Hb_031984_020 0.1031422224 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006846_040 Hb_006846_040 Hb_053264_010 Hb_053264_010 Hb_006846_040--Hb_053264_010 Hb_000103_450 Hb_000103_450 Hb_006846_040--Hb_000103_450 Hb_001047_090 Hb_001047_090 Hb_006846_040--Hb_001047_090 Hb_138585_010 Hb_138585_010 Hb_006846_040--Hb_138585_010 Hb_010962_020 Hb_010962_020 Hb_006846_040--Hb_010962_020 Hb_000903_040 Hb_000903_040 Hb_006846_040--Hb_000903_040 Hb_053264_010--Hb_000903_040 Hb_053264_010--Hb_000103_450 Hb_053264_010--Hb_010962_020 Hb_000003_280 Hb_000003_280 Hb_053264_010--Hb_000003_280 Hb_053264_010--Hb_001047_090 Hb_010407_130 Hb_010407_130 Hb_000103_450--Hb_010407_130 Hb_004435_020 Hb_004435_020 Hb_000103_450--Hb_004435_020 Hb_000103_450--Hb_001047_090 Hb_012653_050 Hb_012653_050 Hb_000103_450--Hb_012653_050 Hb_001047_090--Hb_010962_020 Hb_004202_020 Hb_004202_020 Hb_001047_090--Hb_004202_020 Hb_002902_060 Hb_002902_060 Hb_001047_090--Hb_002902_060 Hb_000392_110 Hb_000392_110 Hb_001047_090--Hb_000392_110 Hb_004804_010 Hb_004804_010 Hb_138585_010--Hb_004804_010 Hb_001534_140 Hb_001534_140 Hb_138585_010--Hb_001534_140 Hb_000417_210 Hb_000417_210 Hb_138585_010--Hb_000417_210 Hb_009252_070 Hb_009252_070 Hb_138585_010--Hb_009252_070 Hb_138585_010--Hb_000903_040 Hb_010962_020--Hb_002902_060 Hb_001898_040 Hb_001898_040 Hb_010962_020--Hb_001898_040 Hb_001136_160 Hb_001136_160 Hb_010962_020--Hb_001136_160 Hb_010962_020--Hb_000003_280 Hb_000903_040--Hb_000417_210 Hb_000676_230 Hb_000676_230 Hb_000903_040--Hb_000676_230 Hb_009783_010 Hb_009783_010 Hb_000903_040--Hb_009783_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0154565 0.185887 0.443472 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0199764 0.212657

CAGE analysis