Hb_009252_070

Information

Type -
Description -
Location Contig9252: 72801-75110
Sequence    

Annotation

kegg
ID pop:POPTR_0015s08590g
description POPTRDRAFT_666455; hypothetical protein
nr
ID KDP31112.1
description hypothetical protein JCGZ_11488 [Jatropha curcas]
swissprot
ID O64411
description Polyamine oxidase OS=Zea mays GN=PAO PE=1 SV=1
trembl
ID A0A067K4P3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11488 PE=4 SV=1
Gene Ontology
ID GO:0046592
description polyamine oxidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62627: 72726-73885
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009252_070 0.0 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
2 Hb_047612_010 0.0749300788 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
3 Hb_000368_050 0.0782156039 - - beta-galactosidase, putative [Ricinus communis]
4 Hb_005269_060 0.0848843851 - - PREDICTED: rac-like GTP-binding protein RAC2 [Cicer arietinum]
5 Hb_138585_010 0.0867382093 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
6 Hb_004650_110 0.0877650883 - - hypothetical protein POPTR_0002s08760g [Populus trichocarpa]
7 Hb_000103_440 0.0968654954 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
8 Hb_001534_140 0.099622596 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
9 Hb_000910_060 0.1006702262 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
10 Hb_003058_240 0.1007978347 - - PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]
11 Hb_012395_060 0.1029565777 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
12 Hb_000676_230 0.1032023852 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
13 Hb_001688_050 0.1049577965 - - PREDICTED: reticulon-like protein B9 [Jatropha curcas]
14 Hb_011709_010 0.1053464114 - - PREDICTED: phytosulfokine receptor 1-like [Jatropha curcas]
15 Hb_000417_210 0.1089450801 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_143629_170 0.1090477217 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
17 Hb_000813_070 0.1111198228 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010193_020 0.1120149144 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
19 Hb_007760_020 0.1122402241 - - PREDICTED: expansin-A1 [Populus euphratica]
20 Hb_005711_030 0.1123413782 - - hypothetical protein RCOM_0460020 [Ricinus communis]

Gene co-expression network

sample Hb_009252_070 Hb_009252_070 Hb_047612_010 Hb_047612_010 Hb_009252_070--Hb_047612_010 Hb_000368_050 Hb_000368_050 Hb_009252_070--Hb_000368_050 Hb_005269_060 Hb_005269_060 Hb_009252_070--Hb_005269_060 Hb_138585_010 Hb_138585_010 Hb_009252_070--Hb_138585_010 Hb_004650_110 Hb_004650_110 Hb_009252_070--Hb_004650_110 Hb_000103_440 Hb_000103_440 Hb_009252_070--Hb_000103_440 Hb_047612_010--Hb_000368_050 Hb_002925_060 Hb_002925_060 Hb_047612_010--Hb_002925_060 Hb_001534_140 Hb_001534_140 Hb_047612_010--Hb_001534_140 Hb_182869_010 Hb_182869_010 Hb_047612_010--Hb_182869_010 Hb_012395_060 Hb_012395_060 Hb_047612_010--Hb_012395_060 Hb_000368_050--Hb_182869_010 Hb_000676_230 Hb_000676_230 Hb_000368_050--Hb_000676_230 Hb_000368_050--Hb_001534_140 Hb_010142_060 Hb_010142_060 Hb_000368_050--Hb_010142_060 Hb_049955_010 Hb_049955_010 Hb_005269_060--Hb_049955_010 Hb_000343_070 Hb_000343_070 Hb_005269_060--Hb_000343_070 Hb_001278_120 Hb_001278_120 Hb_005269_060--Hb_001278_120 Hb_011344_040 Hb_011344_040 Hb_005269_060--Hb_011344_040 Hb_004943_020 Hb_004943_020 Hb_005269_060--Hb_004943_020 Hb_010172_040 Hb_010172_040 Hb_005269_060--Hb_010172_040 Hb_004804_010 Hb_004804_010 Hb_138585_010--Hb_004804_010 Hb_006846_040 Hb_006846_040 Hb_138585_010--Hb_006846_040 Hb_138585_010--Hb_001534_140 Hb_000417_210 Hb_000417_210 Hb_138585_010--Hb_000417_210 Hb_000903_040 Hb_000903_040 Hb_138585_010--Hb_000903_040 Hb_002809_180 Hb_002809_180 Hb_004650_110--Hb_002809_180 Hb_007163_110 Hb_007163_110 Hb_004650_110--Hb_007163_110 Hb_003152_020 Hb_003152_020 Hb_004650_110--Hb_003152_020 Hb_000017_180 Hb_000017_180 Hb_004650_110--Hb_000017_180 Hb_001289_070 Hb_001289_070 Hb_004650_110--Hb_001289_070 Hb_128986_010 Hb_128986_010 Hb_004650_110--Hb_128986_010 Hb_003058_240 Hb_003058_240 Hb_000103_440--Hb_003058_240 Hb_001140_290 Hb_001140_290 Hb_000103_440--Hb_001140_290 Hb_002151_070 Hb_002151_070 Hb_000103_440--Hb_002151_070 Hb_000103_440--Hb_002809_180 Hb_005711_030 Hb_005711_030 Hb_000103_440--Hb_005711_030 Hb_000103_440--Hb_003152_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0677921 0.175503 1.59106 6.50242 0.0129548 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.388087 4.03073

CAGE analysis