Hb_002925_060

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2925: 95433-98197
Sequence    

Annotation

kegg
ID pop:POPTR_0035s00380g
description hypothetical protein
nr
ID KDP45047.1
description hypothetical protein JCGZ_01547 [Jatropha curcas]
swissprot
ID O82500
description Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1
trembl
ID A0A067L9F0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01547 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30670: 95654-97217
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002925_060 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
2 Hb_001408_200 0.0735638294 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
3 Hb_000620_050 0.077458685 - - PREDICTED: uncharacterized protein LOC105649924 [Jatropha curcas]
4 Hb_182869_010 0.0836901749 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
5 Hb_003058_240 0.089438421 - - PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]
6 Hb_047612_010 0.0948099629 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
7 Hb_000402_060 0.0950937655 - - PREDICTED: uncharacterized protein LOC105644642 isoform X2 [Jatropha curcas]
8 Hb_001289_070 0.0978965512 - - PREDICTED: protein YLS9-like [Jatropha curcas]
9 Hb_001688_050 0.0982052907 - - PREDICTED: reticulon-like protein B9 [Jatropha curcas]
10 Hb_011519_040 0.0982517181 - - hypothetical protein POPTR_0015s04770g [Populus trichocarpa]
11 Hb_186765_010 0.1000819076 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
12 Hb_000377_130 0.1015618887 - - hypothetical protein POPTR_0016s00790g [Populus trichocarpa]
13 Hb_000813_070 0.1044325294 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000368_050 0.1058314706 - - beta-galactosidase, putative [Ricinus communis]
15 Hb_000176_050 0.1079791457 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
16 Hb_003152_020 0.1102342129 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
17 Hb_006920_020 0.1105687851 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
18 Hb_000005_010 0.1153115742 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
19 Hb_000122_230 0.1159300227 - - laccase, putative [Ricinus communis]
20 Hb_009252_070 0.1161735984 - - hypothetical protein JCGZ_11488 [Jatropha curcas]

Gene co-expression network

sample Hb_002925_060 Hb_002925_060 Hb_001408_200 Hb_001408_200 Hb_002925_060--Hb_001408_200 Hb_000620_050 Hb_000620_050 Hb_002925_060--Hb_000620_050 Hb_182869_010 Hb_182869_010 Hb_002925_060--Hb_182869_010 Hb_003058_240 Hb_003058_240 Hb_002925_060--Hb_003058_240 Hb_047612_010 Hb_047612_010 Hb_002925_060--Hb_047612_010 Hb_000402_060 Hb_000402_060 Hb_002925_060--Hb_000402_060 Hb_001408_200--Hb_000402_060 Hb_000122_230 Hb_000122_230 Hb_001408_200--Hb_000122_230 Hb_003152_020 Hb_003152_020 Hb_001408_200--Hb_003152_020 Hb_001397_020 Hb_001397_020 Hb_001408_200--Hb_001397_020 Hb_001408_200--Hb_003058_240 Hb_184074_010 Hb_184074_010 Hb_000620_050--Hb_184074_010 Hb_003371_280 Hb_003371_280 Hb_000620_050--Hb_003371_280 Hb_000620_050--Hb_182869_010 Hb_000620_050--Hb_003058_240 Hb_011519_040 Hb_011519_040 Hb_000620_050--Hb_011519_040 Hb_000368_050 Hb_000368_050 Hb_182869_010--Hb_000368_050 Hb_001511_220 Hb_001511_220 Hb_182869_010--Hb_001511_220 Hb_005711_030 Hb_005711_030 Hb_182869_010--Hb_005711_030 Hb_182869_010--Hb_003058_240 Hb_000103_440 Hb_000103_440 Hb_003058_240--Hb_000103_440 Hb_003058_240--Hb_000402_060 Hb_001140_290 Hb_001140_290 Hb_003058_240--Hb_001140_290 Hb_002151_070 Hb_002151_070 Hb_003058_240--Hb_002151_070 Hb_009476_080 Hb_009476_080 Hb_003058_240--Hb_009476_080 Hb_002809_180 Hb_002809_180 Hb_003058_240--Hb_002809_180 Hb_009252_070 Hb_009252_070 Hb_047612_010--Hb_009252_070 Hb_047612_010--Hb_000368_050 Hb_001534_140 Hb_001534_140 Hb_047612_010--Hb_001534_140 Hb_047612_010--Hb_182869_010 Hb_012395_060 Hb_012395_060 Hb_047612_010--Hb_012395_060 Hb_010883_160 Hb_010883_160 Hb_000402_060--Hb_010883_160 Hb_000654_020 Hb_000654_020 Hb_000402_060--Hb_000654_020 Hb_000402_060--Hb_002809_180 Hb_000402_060--Hb_001397_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0327544 0.183733 0.444038 3.02163 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.287737 2.59675

CAGE analysis