Hb_003058_240

Information

Type -
Description -
Location Contig3058: 217947-221489
Sequence    

Annotation

kegg
ID rcu:RCOM_0786390
description tubulin beta chain, putative
nr
ID XP_012073488.1
description PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]
swissprot
ID Q9ZPN7
description Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 PE=2 SV=1
trembl
ID A0A067KL42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08563 PE=3 SV=1
Gene Ontology
ID GO:0005737
description tubulin beta-1 chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32343: 217955-221489 , PASA_asmbl_32344: 220219-221497
cDNA
(Sanger)
(ID:Location)		 026_N06.ab1: 219964-221485 , 029_H06.ab1: 219873-221489 , 043_K04.ab1: 220219-221497 , 053_M13.ab1: 219883-221489

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_240 0.0 - - PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]
2 Hb_000103_440 0.0650410354 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
3 Hb_000402_060 0.074749976 - - PREDICTED: uncharacterized protein LOC105644642 isoform X2 [Jatropha curcas]
4 Hb_001140_290 0.0805882824 - - hypothetical protein JCGZ_26107 [Jatropha curcas]
5 Hb_002151_070 0.0820260891 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Jatropha curcas]
6 Hb_009476_080 0.0821692576 - - BnaA03g18920D [Brassica napus]
7 Hb_002809_180 0.0829920175 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
8 Hb_001408_200 0.0850653786 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
9 Hb_000173_240 0.0859221014 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001688_050 0.0868100581 - - PREDICTED: reticulon-like protein B9 [Jatropha curcas]
11 Hb_000620_050 0.087589899 - - PREDICTED: uncharacterized protein LOC105649924 [Jatropha curcas]
12 Hb_001289_070 0.0881173639 - - PREDICTED: protein YLS9-like [Jatropha curcas]
13 Hb_002925_060 0.089438421 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
14 Hb_158092_090 0.090458699 - - zinc finger protein, putative [Ricinus communis]
15 Hb_002078_180 0.090548482 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
16 Hb_002835_360 0.0910262253 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
17 Hb_182869_010 0.0922135128 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_010172_040 0.09435667 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
19 Hb_000414_090 0.0945608573 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000130_250 0.0951556203 - - PREDICTED: protein trichome birefringence-like 31 [Jatropha curcas]

Gene co-expression network

sample Hb_003058_240 Hb_003058_240 Hb_000103_440 Hb_000103_440 Hb_003058_240--Hb_000103_440 Hb_000402_060 Hb_000402_060 Hb_003058_240--Hb_000402_060 Hb_001140_290 Hb_001140_290 Hb_003058_240--Hb_001140_290 Hb_002151_070 Hb_002151_070 Hb_003058_240--Hb_002151_070 Hb_009476_080 Hb_009476_080 Hb_003058_240--Hb_009476_080 Hb_002809_180 Hb_002809_180 Hb_003058_240--Hb_002809_180 Hb_000103_440--Hb_001140_290 Hb_000103_440--Hb_002151_070 Hb_000103_440--Hb_002809_180 Hb_005711_030 Hb_005711_030 Hb_000103_440--Hb_005711_030 Hb_003152_020 Hb_003152_020 Hb_000103_440--Hb_003152_020 Hb_001408_200 Hb_001408_200 Hb_000402_060--Hb_001408_200 Hb_010883_160 Hb_010883_160 Hb_000402_060--Hb_010883_160 Hb_000654_020 Hb_000654_020 Hb_000402_060--Hb_000654_020 Hb_000402_060--Hb_002809_180 Hb_001397_020 Hb_001397_020 Hb_000402_060--Hb_001397_020 Hb_001140_290--Hb_002151_070 Hb_005000_150 Hb_005000_150 Hb_001140_290--Hb_005000_150 Hb_138977_010 Hb_138977_010 Hb_001140_290--Hb_138977_010 Hb_001140_290--Hb_002809_180 Hb_010589_010 Hb_010589_010 Hb_001140_290--Hb_010589_010 Hb_002151_070--Hb_005000_150 Hb_000813_070 Hb_000813_070 Hb_002151_070--Hb_000813_070 Hb_002151_070--Hb_005711_030 Hb_001289_070 Hb_001289_070 Hb_002151_070--Hb_001289_070 Hb_002078_180 Hb_002078_180 Hb_009476_080--Hb_002078_180 Hb_015807_090 Hb_015807_090 Hb_009476_080--Hb_015807_090 Hb_003747_160 Hb_003747_160 Hb_009476_080--Hb_003747_160 Hb_002835_360 Hb_002835_360 Hb_009476_080--Hb_002835_360 Hb_005686_040 Hb_005686_040 Hb_009476_080--Hb_005686_040 Hb_001051_060 Hb_001051_060 Hb_009476_080--Hb_001051_060 Hb_010172_040 Hb_010172_040 Hb_002809_180--Hb_010172_040 Hb_002809_180--Hb_001397_020 Hb_003549_100 Hb_003549_100 Hb_002809_180--Hb_003549_100 Hb_002809_180--Hb_010589_010 Hb_002809_180--Hb_003152_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.909561 16.9822 86.6794 588.741 0.831882 0.663574
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0565655 0.0714034 22.0509 455.112

CAGE analysis