Hb_001408_200

Information

Type -
Description -
Location Contig1408: 226123-235216
Sequence    

Annotation

kegg
ID rcu:RCOM_1145870
description Oligopeptide transporter, putative
nr
ID KDP35526.1
description hypothetical protein JCGZ_08964 [Jatropha curcas]
swissprot
ID Q9FG72
description Oligopeptide transporter 1 OS=Arabidopsis thaliana GN=OPT1 PE=2 SV=1
trembl
ID A0A067KH09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08964 PE=4 SV=1
Gene Ontology
ID GO:0055085
description oligopeptide transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11062: 234647-234855
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001408_200 0.0 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
2 Hb_000402_060 0.0513105982 - - PREDICTED: uncharacterized protein LOC105644642 isoform X2 [Jatropha curcas]
3 Hb_002925_060 0.0735638294 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
4 Hb_000122_230 0.0759044935 - - laccase, putative [Ricinus communis]
5 Hb_003152_020 0.0806086159 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
6 Hb_001397_020 0.0837237346 - - cytochrome P450 family protein [Populus trichocarpa]
7 Hb_003058_240 0.0850653786 - - PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]
8 Hb_010883_160 0.0862807647 - - PREDICTED: pathogenesis-related protein 5 isoform X1 [Jatropha curcas]
9 Hb_002245_060 0.087370141 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
10 Hb_005000_150 0.0889354284 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001289_070 0.0921351687 - - PREDICTED: protein YLS9-like [Jatropha curcas]
12 Hb_000654_020 0.096514488 - - hypothetical protein CICLE_v10006262mg [Citrus clementina]
13 Hb_011519_040 0.0980823705 - - hypothetical protein POPTR_0015s04770g [Populus trichocarpa]
14 Hb_002809_180 0.0996166755 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
15 Hb_000103_440 0.0997030865 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
16 Hb_080797_010 0.1022475471 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
17 Hb_001140_290 0.103834789 - - hypothetical protein JCGZ_26107 [Jatropha curcas]
18 Hb_000176_050 0.1044337942 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
19 Hb_121624_010 0.1072931814 - - PREDICTED: uncharacterized protein LOC105634410 [Jatropha curcas]
20 Hb_186765_010 0.1080246039 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]

Gene co-expression network

sample Hb_001408_200 Hb_001408_200 Hb_000402_060 Hb_000402_060 Hb_001408_200--Hb_000402_060 Hb_002925_060 Hb_002925_060 Hb_001408_200--Hb_002925_060 Hb_000122_230 Hb_000122_230 Hb_001408_200--Hb_000122_230 Hb_003152_020 Hb_003152_020 Hb_001408_200--Hb_003152_020 Hb_001397_020 Hb_001397_020 Hb_001408_200--Hb_001397_020 Hb_003058_240 Hb_003058_240 Hb_001408_200--Hb_003058_240 Hb_010883_160 Hb_010883_160 Hb_000402_060--Hb_010883_160 Hb_000402_060--Hb_003058_240 Hb_000654_020 Hb_000654_020 Hb_000402_060--Hb_000654_020 Hb_002809_180 Hb_002809_180 Hb_000402_060--Hb_002809_180 Hb_000402_060--Hb_001397_020 Hb_000620_050 Hb_000620_050 Hb_002925_060--Hb_000620_050 Hb_182869_010 Hb_182869_010 Hb_002925_060--Hb_182869_010 Hb_002925_060--Hb_003058_240 Hb_047612_010 Hb_047612_010 Hb_002925_060--Hb_047612_010 Hb_002925_060--Hb_000402_060 Hb_002245_060 Hb_002245_060 Hb_000122_230--Hb_002245_060 Hb_004837_080 Hb_004837_080 Hb_000122_230--Hb_004837_080 Hb_080797_010 Hb_080797_010 Hb_000122_230--Hb_080797_010 Hb_000254_080 Hb_000254_080 Hb_000122_230--Hb_000254_080 Hb_007620_020 Hb_007620_020 Hb_000122_230--Hb_007620_020 Hb_003152_020--Hb_001397_020 Hb_007163_110 Hb_007163_110 Hb_003152_020--Hb_007163_110 Hb_136408_040 Hb_136408_040 Hb_003152_020--Hb_136408_040 Hb_010589_010 Hb_010589_010 Hb_003152_020--Hb_010589_010 Hb_003152_020--Hb_002809_180 Hb_005000_150 Hb_005000_150 Hb_003152_020--Hb_005000_150 Hb_003549_100 Hb_003549_100 Hb_001397_020--Hb_003549_100 Hb_001397_020--Hb_010589_010 Hb_001397_020--Hb_002809_180 Hb_001397_020--Hb_010883_160 Hb_000002_110 Hb_000002_110 Hb_001397_020--Hb_000002_110 Hb_000103_440 Hb_000103_440 Hb_003058_240--Hb_000103_440 Hb_001140_290 Hb_001140_290 Hb_003058_240--Hb_001140_290 Hb_002151_070 Hb_002151_070 Hb_003058_240--Hb_002151_070 Hb_009476_080 Hb_009476_080 Hb_003058_240--Hb_009476_080 Hb_003058_240--Hb_002809_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0908658 0.307892 1.65956 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.126594 1.76789

CAGE analysis