Hb_004837_080

Information

Type transcription factor
Description TF Family: MYB
Location Contig4837: 81646-84528
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05860g
description POPTRDRAFT_203071; hypothetical protein
nr
ID XP_012089996.1
description PREDICTED: transcription factor MYB46 [Jatropha curcas]
swissprot
ID Q9LXV2
description Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1
trembl
ID A0A067JRD5
description MYB family protein OS=Jatropha curcas GN=JCGZ_25920 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb46-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44866: 82102-83507
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_080 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
2 Hb_000254_080 0.047861524 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
3 Hb_002119_150 0.0584526346 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
4 Hb_001269_540 0.0665378172 - - hypothetical protein VITISV_038016 [Vitis vinifera]
5 Hb_080797_010 0.0683971637 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
6 Hb_007620_020 0.0706854121 - - PREDICTED: cationic amino acid transporter 7, chloroplastic-like isoform X1 [Jatropha curcas]
7 Hb_000122_230 0.0728384166 - - laccase, putative [Ricinus communis]
8 Hb_089124_010 0.0845662099 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
9 Hb_000230_490 0.0847037346 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000920_100 0.0848829406 - - o-methyltransferase, putative [Ricinus communis]
11 Hb_000608_190 0.0934850251 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]
12 Hb_001488_160 0.1020916283 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
13 Hb_001097_140 0.1041926198 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000997_370 0.1096005276 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
15 Hb_000176_050 0.1111596202 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
16 Hb_189208_040 0.1124898618 - - hypothetical protein POPTR_0002s18920g [Populus trichocarpa]
17 Hb_000538_110 0.1127689158 - - sucrose synthase 1 [Hevea brasiliensis]
18 Hb_000260_520 0.1128087974 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_005066_040 0.1150277537 - - Reticuline oxidase precursor, putative [Ricinus communis]
20 Hb_003358_030 0.1150961903 - - ankyrin-kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004837_080 Hb_004837_080 Hb_000254_080 Hb_000254_080 Hb_004837_080--Hb_000254_080 Hb_002119_150 Hb_002119_150 Hb_004837_080--Hb_002119_150 Hb_001269_540 Hb_001269_540 Hb_004837_080--Hb_001269_540 Hb_080797_010 Hb_080797_010 Hb_004837_080--Hb_080797_010 Hb_007620_020 Hb_007620_020 Hb_004837_080--Hb_007620_020 Hb_000122_230 Hb_000122_230 Hb_004837_080--Hb_000122_230 Hb_000254_080--Hb_002119_150 Hb_000254_080--Hb_000122_230 Hb_000254_080--Hb_001269_540 Hb_000254_080--Hb_080797_010 Hb_000997_370 Hb_000997_370 Hb_000254_080--Hb_000997_370 Hb_002119_150--Hb_001269_540 Hb_000538_110 Hb_000538_110 Hb_002119_150--Hb_000538_110 Hb_000260_520 Hb_000260_520 Hb_002119_150--Hb_000260_520 Hb_002119_150--Hb_080797_010 Hb_001269_540--Hb_080797_010 Hb_000230_490 Hb_000230_490 Hb_001269_540--Hb_000230_490 Hb_140595_020 Hb_140595_020 Hb_001269_540--Hb_140595_020 Hb_001097_140 Hb_001097_140 Hb_080797_010--Hb_001097_140 Hb_080797_010--Hb_000122_230 Hb_080797_010--Hb_000230_490 Hb_089124_010 Hb_089124_010 Hb_007620_020--Hb_089124_010 Hb_000608_190 Hb_000608_190 Hb_007620_020--Hb_000608_190 Hb_000670_070 Hb_000670_070 Hb_007620_020--Hb_000670_070 Hb_002245_060 Hb_002245_060 Hb_007620_020--Hb_002245_060 Hb_007620_020--Hb_000122_230 Hb_000122_230--Hb_002245_060 Hb_001408_200 Hb_001408_200 Hb_000122_230--Hb_001408_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0113148 1.43382 2.30826 9.23906 0.011333 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.051475 0.02025 0.0382699 1.02439 17.2253

CAGE analysis