Hb_000260_520

Information

Type -
Description -
Location Contig260: 358888-364451
Sequence    

Annotation

kegg
ID rcu:RCOM_1323570
description receptor protein kinase, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_002519985.1
description receptor protein kinase, putative [Ricinus communis]
swissprot
ID Q9LT96
description Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1
trembl
ID B9S1W6
description Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_1323570 PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable leucine-rich repeat receptor-like protein kinase at5g49770

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27013: 358730-363725
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_520 0.0 - - receptor protein kinase, putative [Ricinus communis]
2 Hb_140595_020 0.0606103331 - - PREDICTED: vegetative cell wall protein gp1-like [Solanum lycopersicum]
3 Hb_001104_070 0.0735049149 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
4 Hb_005062_100 0.0743021159 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
5 Hb_140595_030 0.0787413335 - - -
6 Hb_018487_040 0.0814338789 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
7 Hb_002119_150 0.0817881892 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
8 Hb_189208_080 0.0828085306 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 11-like isoform X1 [Jatropha curcas]
9 Hb_008518_060 0.0870149045 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
10 Hb_001105_150 0.0876352461 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
11 Hb_022092_070 0.0877988602 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5 [Jatropha curcas]
12 Hb_002675_220 0.0883315134 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
13 Hb_001488_160 0.0902683648 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
14 Hb_000538_110 0.0909137273 - - sucrose synthase 1 [Hevea brasiliensis]
15 Hb_002250_040 0.0919156942 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
16 Hb_005066_040 0.0940872491 - - Reticuline oxidase precursor, putative [Ricinus communis]
17 Hb_080048_030 0.0955529499 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
18 Hb_001186_040 0.0957477401 - - Peroxidase 3 precursor, putative [Ricinus communis]
19 Hb_000739_280 0.0963314638 - - alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_005483_040 0.0965938975 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]

Gene co-expression network

sample Hb_000260_520 Hb_000260_520 Hb_140595_020 Hb_140595_020 Hb_000260_520--Hb_140595_020 Hb_001104_070 Hb_001104_070 Hb_000260_520--Hb_001104_070 Hb_005062_100 Hb_005062_100 Hb_000260_520--Hb_005062_100 Hb_140595_030 Hb_140595_030 Hb_000260_520--Hb_140595_030 Hb_018487_040 Hb_018487_040 Hb_000260_520--Hb_018487_040 Hb_002119_150 Hb_002119_150 Hb_000260_520--Hb_002119_150 Hb_140595_020--Hb_140595_030 Hb_001186_040 Hb_001186_040 Hb_140595_020--Hb_001186_040 Hb_140595_020--Hb_001104_070 Hb_000155_230 Hb_000155_230 Hb_140595_020--Hb_000155_230 Hb_001105_150 Hb_001105_150 Hb_140595_020--Hb_001105_150 Hb_002675_220 Hb_002675_220 Hb_001104_070--Hb_002675_220 Hb_080048_030 Hb_080048_030 Hb_001104_070--Hb_080048_030 Hb_001104_070--Hb_018487_040 Hb_189208_080 Hb_189208_080 Hb_001104_070--Hb_189208_080 Hb_001104_070--Hb_140595_030 Hb_002250_040 Hb_002250_040 Hb_001104_070--Hb_002250_040 Hb_000029_210 Hb_000029_210 Hb_005062_100--Hb_000029_210 Hb_008518_060 Hb_008518_060 Hb_005062_100--Hb_008518_060 Hb_000023_100 Hb_000023_100 Hb_005062_100--Hb_000023_100 Hb_011362_010 Hb_011362_010 Hb_005062_100--Hb_011362_010 Hb_000739_280 Hb_000739_280 Hb_005062_100--Hb_000739_280 Hb_140595_030--Hb_000155_230 Hb_140595_030--Hb_001105_150 Hb_000920_340 Hb_000920_340 Hb_140595_030--Hb_000920_340 Hb_018487_040--Hb_002675_220 Hb_018487_040--Hb_002250_040 Hb_005483_040 Hb_005483_040 Hb_018487_040--Hb_005483_040 Hb_002329_050 Hb_002329_050 Hb_018487_040--Hb_002329_050 Hb_018487_040--Hb_080048_030 Hb_004837_080 Hb_004837_080 Hb_002119_150--Hb_004837_080 Hb_000254_080 Hb_000254_080 Hb_002119_150--Hb_000254_080 Hb_001269_540 Hb_001269_540 Hb_002119_150--Hb_001269_540 Hb_000538_110 Hb_000538_110 Hb_002119_150--Hb_000538_110 Hb_080797_010 Hb_080797_010 Hb_002119_150--Hb_080797_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0497701 2.54592 5.15606 21.7182 0.0902346 0.0162477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0133148 0 0.0200694 0.290776 46.409

CAGE analysis