Hb_001104_070

Information

Type -
Description -
Location Contig1104: 82047-86330
Sequence    

Annotation

kegg
ID sbi:SORBI_10g024640
description SORBIDRAFT_10g024640, Sb10g024640; hypothetical protein
nr
ID XP_002437311.1
description hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
swissprot
ID -
description -
trembl
ID C5Z685
description Putative uncharacterized protein Sb10g024640 OS=Sorghum bicolor GN=Sb10g024640 PE=4 SV=1
Gene Ontology
ID GO:0016740
description glucomannan 4-beta-mannosyltransferase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001104_070 0.0 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
2 Hb_002675_220 0.0469735554 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
3 Hb_080048_030 0.0486748408 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
4 Hb_018487_040 0.0526974891 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
5 Hb_189208_080 0.0604938436 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 11-like isoform X1 [Jatropha curcas]
6 Hb_140595_030 0.0718899621 - - -
7 Hb_002250_040 0.0725414057 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
8 Hb_000260_520 0.0735049149 - - receptor protein kinase, putative [Ricinus communis]
9 Hb_000920_340 0.0740061355 - - o-methyltransferase, putative [Ricinus communis]
10 Hb_140595_020 0.0823817088 - - PREDICTED: vegetative cell wall protein gp1-like [Solanum lycopersicum]
11 Hb_169492_010 0.0826630957 - - PREDICTED: expansin-like B1 [Jatropha curcas]
12 Hb_001105_150 0.0853206184 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
13 Hb_007718_040 0.0871450459 - - hypothetical protein PRUPE_ppb025054mg [Prunus persica]
14 Hb_001488_160 0.0924749104 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
15 Hb_005483_040 0.0933075834 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
16 Hb_005675_030 0.094396433 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
17 Hb_002445_020 0.0973536538 - - -
18 Hb_000155_230 0.0974713553 - - rac gtpase, putative [Ricinus communis]
19 Hb_018202_040 0.1027925232 - - PREDICTED: phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like [Jatropha curcas]
20 Hb_011214_080 0.1036598237 - - sucrose synthase 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001104_070 Hb_001104_070 Hb_002675_220 Hb_002675_220 Hb_001104_070--Hb_002675_220 Hb_080048_030 Hb_080048_030 Hb_001104_070--Hb_080048_030 Hb_018487_040 Hb_018487_040 Hb_001104_070--Hb_018487_040 Hb_189208_080 Hb_189208_080 Hb_001104_070--Hb_189208_080 Hb_140595_030 Hb_140595_030 Hb_001104_070--Hb_140595_030 Hb_002250_040 Hb_002250_040 Hb_001104_070--Hb_002250_040 Hb_002675_220--Hb_002250_040 Hb_002675_220--Hb_018487_040 Hb_002675_220--Hb_189208_080 Hb_002675_220--Hb_080048_030 Hb_005483_040 Hb_005483_040 Hb_002675_220--Hb_005483_040 Hb_080048_030--Hb_018487_040 Hb_169492_010 Hb_169492_010 Hb_080048_030--Hb_169492_010 Hb_005675_030 Hb_005675_030 Hb_080048_030--Hb_005675_030 Hb_080048_030--Hb_189208_080 Hb_018487_040--Hb_002250_040 Hb_018487_040--Hb_005483_040 Hb_002329_050 Hb_002329_050 Hb_018487_040--Hb_002329_050 Hb_000920_340 Hb_000920_340 Hb_189208_080--Hb_000920_340 Hb_189208_080--Hb_140595_030 Hb_011214_080 Hb_011214_080 Hb_189208_080--Hb_011214_080 Hb_000260_520 Hb_000260_520 Hb_189208_080--Hb_000260_520 Hb_140595_020 Hb_140595_020 Hb_140595_030--Hb_140595_020 Hb_000155_230 Hb_000155_230 Hb_140595_030--Hb_000155_230 Hb_001105_150 Hb_001105_150 Hb_140595_030--Hb_001105_150 Hb_140595_030--Hb_000920_340 Hb_140595_030--Hb_000260_520 Hb_002250_040--Hb_005483_040 Hb_000540_080 Hb_000540_080 Hb_002250_040--Hb_000540_080 Hb_005062_100 Hb_005062_100 Hb_002250_040--Hb_005062_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.121932 0.28046 1.10047 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0267551 3.23854

CAGE analysis