Hb_002250_040

Information

Type -
Description -
Location Contig2250: 76026-76604
Sequence    

Annotation

kegg
ID rcu:RCOM_0815050
description hypothetical protein
nr
ID XP_012078276.1
description PREDICTED: transcription repressor OFP17 [Jatropha curcas]
swissprot
ID Q84RF2
description Transcription repressor OFP17 OS=Arabidopsis thaliana GN=OFP17 PE=2 SV=1
trembl
ID B9RX04
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0815050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002250_040 0.0 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
2 Hb_002675_220 0.0378503095 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
3 Hb_018487_040 0.0507600116 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
4 Hb_005483_040 0.056318746 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
5 Hb_000540_080 0.0681686187 - - PREDICTED: laccase-17 [Jatropha curcas]
6 Hb_001104_070 0.0725414057 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
7 Hb_005062_100 0.0780907051 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
8 Hb_002329_050 0.0784024778 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011362_010 0.0796371971 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
10 Hb_000883_080 0.0802238372 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_000363_070 0.0821449487 - - conserved hypothetical protein [Ricinus communis]
12 Hb_045260_010 0.0829706492 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
13 Hb_099263_010 0.0843624422 - - hypothetical protein AALP_AAs50029U000400 [Arabis alpina]
14 Hb_034299_010 0.0858902744 - - F-box and wd40 domain protein, putative [Ricinus communis]
15 Hb_006718_030 0.0866088432 - - ATPase, F1 complex, gamma subunit protein [Theobroma cacao]
16 Hb_002010_040 0.0885611016 - - -
17 Hb_000007_290 0.0885865456 - - hypothetical protein AALP_AAs43195U000200 [Arabis alpina]
18 Hb_000260_520 0.0919156942 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_003647_070 0.0926484046 - - hypothetical protein POPTR_0006s09430g [Populus trichocarpa]
20 Hb_189208_080 0.0927407601 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 11-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002250_040 Hb_002250_040 Hb_002675_220 Hb_002675_220 Hb_002250_040--Hb_002675_220 Hb_018487_040 Hb_018487_040 Hb_002250_040--Hb_018487_040 Hb_005483_040 Hb_005483_040 Hb_002250_040--Hb_005483_040 Hb_000540_080 Hb_000540_080 Hb_002250_040--Hb_000540_080 Hb_001104_070 Hb_001104_070 Hb_002250_040--Hb_001104_070 Hb_005062_100 Hb_005062_100 Hb_002250_040--Hb_005062_100 Hb_002675_220--Hb_001104_070 Hb_002675_220--Hb_018487_040 Hb_189208_080 Hb_189208_080 Hb_002675_220--Hb_189208_080 Hb_080048_030 Hb_080048_030 Hb_002675_220--Hb_080048_030 Hb_002675_220--Hb_005483_040 Hb_018487_040--Hb_001104_070 Hb_018487_040--Hb_005483_040 Hb_002329_050 Hb_002329_050 Hb_018487_040--Hb_002329_050 Hb_018487_040--Hb_080048_030 Hb_005483_040--Hb_002329_050 Hb_000883_080 Hb_000883_080 Hb_005483_040--Hb_000883_080 Hb_006718_030 Hb_006718_030 Hb_005483_040--Hb_006718_030 Hb_011362_010 Hb_011362_010 Hb_005483_040--Hb_011362_010 Hb_045260_010 Hb_045260_010 Hb_000540_080--Hb_045260_010 Hb_000363_070 Hb_000363_070 Hb_000540_080--Hb_000363_070 Hb_005228_050 Hb_005228_050 Hb_000540_080--Hb_005228_050 Hb_000724_040 Hb_000724_040 Hb_000540_080--Hb_000724_040 Hb_000540_080--Hb_011362_010 Hb_000160_120 Hb_000160_120 Hb_000540_080--Hb_000160_120 Hb_001104_070--Hb_080048_030 Hb_001104_070--Hb_189208_080 Hb_140595_030 Hb_140595_030 Hb_001104_070--Hb_140595_030 Hb_000029_210 Hb_000029_210 Hb_005062_100--Hb_000029_210 Hb_008518_060 Hb_008518_060 Hb_005062_100--Hb_008518_060 Hb_000023_100 Hb_000023_100 Hb_005062_100--Hb_000023_100 Hb_005062_100--Hb_011362_010 Hb_000260_520 Hb_000260_520 Hb_005062_100--Hb_000260_520 Hb_000739_280 Hb_000739_280 Hb_005062_100--Hb_000739_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.31142 2.81085 9.26823 0.0430443 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.103216 24.8012

CAGE analysis