Hb_005483_040

Information

Type -
Description -
Location Contig5483: 29594-40550
Sequence    

Annotation

kegg
ID pop:POPTR_0006s14640g
description hypothetical protein
nr
ID XP_012077534.1
description PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
swissprot
ID Q9LYG9
description Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1
trembl
ID A0A067KNM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07466 PE=4 SV=1
Gene Ontology
ID GO:0009523
description mechanosensitive ion channel protein 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48051: 37402-37892 , PASA_asmbl_48052: 39192-40405
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005483_040 0.0 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
2 Hb_002329_050 0.0516920445 - - conserved hypothetical protein [Ricinus communis]
3 Hb_018487_040 0.0540072596 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
4 Hb_002250_040 0.056318746 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
5 Hb_000883_080 0.0644488896 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_006718_030 0.070024443 - - ATPase, F1 complex, gamma subunit protein [Theobroma cacao]
7 Hb_011362_010 0.0734277112 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
8 Hb_002675_220 0.0794878086 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
9 Hb_000268_050 0.0810034805 - - PREDICTED: tetrapyrrole-binding protein, chloroplastic [Jatropha curcas]
10 Hb_022832_050 0.0820992905 - - PREDICTED: protein argonaute 16 isoform X1 [Sesamum indicum]
11 Hb_002149_060 0.083052325 - - catalytic, putative [Ricinus communis]
12 Hb_005675_030 0.0855784192 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
13 Hb_000540_080 0.0857735424 - - PREDICTED: laccase-17 [Jatropha curcas]
14 Hb_005062_100 0.0863511982 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
15 Hb_000928_260 0.0900252632 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
16 Hb_001488_160 0.0903928386 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
17 Hb_033681_030 0.0904412298 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
18 Hb_018202_040 0.0930286994 - - PREDICTED: phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like [Jatropha curcas]
19 Hb_001104_070 0.0933075834 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
20 Hb_003787_030 0.093724355 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005483_040 Hb_005483_040 Hb_002329_050 Hb_002329_050 Hb_005483_040--Hb_002329_050 Hb_018487_040 Hb_018487_040 Hb_005483_040--Hb_018487_040 Hb_002250_040 Hb_002250_040 Hb_005483_040--Hb_002250_040 Hb_000883_080 Hb_000883_080 Hb_005483_040--Hb_000883_080 Hb_006718_030 Hb_006718_030 Hb_005483_040--Hb_006718_030 Hb_011362_010 Hb_011362_010 Hb_005483_040--Hb_011362_010 Hb_000268_050 Hb_000268_050 Hb_002329_050--Hb_000268_050 Hb_002329_050--Hb_000883_080 Hb_002329_050--Hb_011362_010 Hb_002329_050--Hb_018487_040 Hb_000928_260 Hb_000928_260 Hb_002329_050--Hb_000928_260 Hb_002675_220 Hb_002675_220 Hb_018487_040--Hb_002675_220 Hb_018487_040--Hb_002250_040 Hb_001104_070 Hb_001104_070 Hb_018487_040--Hb_001104_070 Hb_080048_030 Hb_080048_030 Hb_018487_040--Hb_080048_030 Hb_002250_040--Hb_002675_220 Hb_000540_080 Hb_000540_080 Hb_002250_040--Hb_000540_080 Hb_002250_040--Hb_001104_070 Hb_005062_100 Hb_005062_100 Hb_002250_040--Hb_005062_100 Hb_000883_080--Hb_000928_260 Hb_000883_080--Hb_011362_010 Hb_000883_080--Hb_018487_040 Hb_000883_080--Hb_006718_030 Hb_006718_030--Hb_002329_050 Hb_006718_030--Hb_000268_050 Hb_000363_070 Hb_000363_070 Hb_006718_030--Hb_000363_070 Hb_000140_040 Hb_000140_040 Hb_006718_030--Hb_000140_040 Hb_011362_010--Hb_000268_050 Hb_011362_010--Hb_000540_080 Hb_000160_120 Hb_000160_120 Hb_011362_010--Hb_000160_120 Hb_096907_010 Hb_096907_010 Hb_011362_010--Hb_096907_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00474071 0.081853 0.664088 1.45531 0.017743 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0200831 4.05721

CAGE analysis