Hb_080048_030

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig80048: 14191-19144
Sequence    

Annotation

kegg
ID tcc:TCM_031055
description Leucine-rich repeat containing protein
nr
ID XP_007021012.1
description Leucine-rich repeat containing protein [Theobroma cacao]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A061F749
description Leucine-rich repeat containing protein OS=Theobroma cacao GN=TCM_031055 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58780: 16795-19252
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080048_030 0.0 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
2 Hb_001104_070 0.0486748408 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
3 Hb_018487_040 0.0631769803 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
4 Hb_169492_010 0.0668485624 - - PREDICTED: expansin-like B1 [Jatropha curcas]
5 Hb_005675_030 0.0705436921 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
6 Hb_002675_220 0.0761374254 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
7 Hb_189208_080 0.0837454731 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 11-like isoform X1 [Jatropha curcas]
8 Hb_001488_160 0.0842539421 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
9 Hb_000920_340 0.0846505412 - - o-methyltransferase, putative [Ricinus communis]
10 Hb_018202_040 0.0864721304 - - PREDICTED: phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like [Jatropha curcas]
11 Hb_011537_130 0.0886655417 - - unnamed protein product [Vitis vinifera]
12 Hb_002250_040 0.0945825677 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
13 Hb_140595_030 0.0947449761 - - -
14 Hb_000260_520 0.0955529499 - - receptor protein kinase, putative [Ricinus communis]
15 Hb_005483_040 0.0982794999 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
16 Hb_007718_040 0.0997350578 - - hypothetical protein PRUPE_ppb025054mg [Prunus persica]
17 Hb_140595_020 0.1017391122 - - PREDICTED: vegetative cell wall protein gp1-like [Solanum lycopersicum]
18 Hb_002081_140 0.1029407175 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011214_080 0.1031343921 - - sucrose synthase 1 [Hevea brasiliensis]
20 Hb_002445_020 0.1084207362 - - -

Gene co-expression network

sample Hb_080048_030 Hb_080048_030 Hb_001104_070 Hb_001104_070 Hb_080048_030--Hb_001104_070 Hb_018487_040 Hb_018487_040 Hb_080048_030--Hb_018487_040 Hb_169492_010 Hb_169492_010 Hb_080048_030--Hb_169492_010 Hb_005675_030 Hb_005675_030 Hb_080048_030--Hb_005675_030 Hb_002675_220 Hb_002675_220 Hb_080048_030--Hb_002675_220 Hb_189208_080 Hb_189208_080 Hb_080048_030--Hb_189208_080 Hb_001104_070--Hb_002675_220 Hb_001104_070--Hb_018487_040 Hb_001104_070--Hb_189208_080 Hb_140595_030 Hb_140595_030 Hb_001104_070--Hb_140595_030 Hb_002250_040 Hb_002250_040 Hb_001104_070--Hb_002250_040 Hb_018487_040--Hb_002675_220 Hb_018487_040--Hb_002250_040 Hb_005483_040 Hb_005483_040 Hb_018487_040--Hb_005483_040 Hb_002329_050 Hb_002329_050 Hb_018487_040--Hb_002329_050 Hb_018202_040 Hb_018202_040 Hb_169492_010--Hb_018202_040 Hb_169492_010--Hb_005675_030 Hb_169492_010--Hb_018487_040 Hb_011537_130 Hb_011537_130 Hb_169492_010--Hb_011537_130 Hb_001951_050 Hb_001951_050 Hb_169492_010--Hb_001951_050 Hb_005675_030--Hb_011537_130 Hb_001488_160 Hb_001488_160 Hb_005675_030--Hb_001488_160 Hb_005675_030--Hb_018202_040 Hb_005675_030--Hb_018487_040 Hb_002675_220--Hb_002250_040 Hb_002675_220--Hb_189208_080 Hb_002675_220--Hb_005483_040 Hb_000920_340 Hb_000920_340 Hb_189208_080--Hb_000920_340 Hb_189208_080--Hb_140595_030 Hb_011214_080 Hb_011214_080 Hb_189208_080--Hb_011214_080 Hb_000260_520 Hb_000260_520 Hb_189208_080--Hb_000260_520
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0945685 0.230528 0.666167 0 0.00652787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0297457 2.23538

CAGE analysis