Hb_000920_340

Information

Type -
Description -
Location Contig920: 217709-223981
Sequence    

Annotation

kegg
ID rcu:RCOM_1452630
description o-methyltransferase, putative (EC:2.1.1.146)
nr
ID XP_002513062.1
description o-methyltransferase, putative [Ricinus communis]
swissprot
ID Q6WUC2
description (R,S)-reticuline 7-O-methyltransferase OS=Papaver somniferum GN=PSOMT1 PE=1 SV=1
trembl
ID B9RGB0
description O-methyltransferase, putative OS=Ricinus communis GN=RCOM_1452630 PE=4 SV=1
Gene Ontology
ID GO:0046983
description o-methyltransferase omt2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62446: 218097-219600
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_340 0.0 - - o-methyltransferase, putative [Ricinus communis]
2 Hb_007718_040 0.069920481 - - hypothetical protein PRUPE_ppb025054mg [Prunus persica]
3 Hb_189208_080 0.0707569631 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 11-like isoform X1 [Jatropha curcas]
4 Hb_140595_030 0.0723887162 - - -
5 Hb_001104_070 0.0740061355 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
6 Hb_080048_030 0.0846505412 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
7 Hb_002445_020 0.0853567994 - - -
8 Hb_002764_020 0.0857300336 - - hypothetical protein JCGZ_24084 [Jatropha curcas]
9 Hb_140595_020 0.1028510912 - - PREDICTED: vegetative cell wall protein gp1-like [Solanum lycopersicum]
10 Hb_000155_230 0.1050329663 - - rac gtpase, putative [Ricinus communis]
11 Hb_002675_220 0.105152695 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
12 Hb_001105_150 0.1069232511 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
13 Hb_003559_010 0.1110131802 - - Peroxidase 27 precursor, putative [Ricinus communis]
14 Hb_003253_030 0.1143131723 - - lysosomal pro-X carboxypeptidase, putative [Ricinus communis]
15 Hb_000768_080 0.1154132525 - - Mlo protein [Hevea brasiliensis]
16 Hb_018487_040 0.1159335585 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
17 Hb_169492_010 0.1159837722 - - PREDICTED: expansin-like B1 [Jatropha curcas]
18 Hb_000260_520 0.1194036962 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_002620_040 0.1207673975 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
20 Hb_001459_020 0.1228260105 - - ankyrin repeat protein [Bruguiera gymnorhiza]

Gene co-expression network

sample Hb_000920_340 Hb_000920_340 Hb_007718_040 Hb_007718_040 Hb_000920_340--Hb_007718_040 Hb_189208_080 Hb_189208_080 Hb_000920_340--Hb_189208_080 Hb_140595_030 Hb_140595_030 Hb_000920_340--Hb_140595_030 Hb_001104_070 Hb_001104_070 Hb_000920_340--Hb_001104_070 Hb_080048_030 Hb_080048_030 Hb_000920_340--Hb_080048_030 Hb_002445_020 Hb_002445_020 Hb_000920_340--Hb_002445_020 Hb_002764_020 Hb_002764_020 Hb_007718_040--Hb_002764_020 Hb_007718_040--Hb_002445_020 Hb_007718_040--Hb_001104_070 Hb_007718_040--Hb_140595_030 Hb_007718_040--Hb_189208_080 Hb_189208_080--Hb_001104_070 Hb_002675_220 Hb_002675_220 Hb_189208_080--Hb_002675_220 Hb_189208_080--Hb_140595_030 Hb_011214_080 Hb_011214_080 Hb_189208_080--Hb_011214_080 Hb_000260_520 Hb_000260_520 Hb_189208_080--Hb_000260_520 Hb_140595_020 Hb_140595_020 Hb_140595_030--Hb_140595_020 Hb_000155_230 Hb_000155_230 Hb_140595_030--Hb_000155_230 Hb_001105_150 Hb_001105_150 Hb_140595_030--Hb_001105_150 Hb_140595_030--Hb_001104_070 Hb_140595_030--Hb_000260_520 Hb_001104_070--Hb_002675_220 Hb_001104_070--Hb_080048_030 Hb_018487_040 Hb_018487_040 Hb_001104_070--Hb_018487_040 Hb_002250_040 Hb_002250_040 Hb_001104_070--Hb_002250_040 Hb_080048_030--Hb_018487_040 Hb_169492_010 Hb_169492_010 Hb_080048_030--Hb_169492_010 Hb_005675_030 Hb_005675_030 Hb_080048_030--Hb_005675_030 Hb_080048_030--Hb_002675_220 Hb_080048_030--Hb_189208_080 Hb_002445_020--Hb_002764_020 Hb_002600_110 Hb_002600_110 Hb_002445_020--Hb_002600_110 Hb_000768_080 Hb_000768_080 Hb_002445_020--Hb_000768_080 Hb_042123_010 Hb_042123_010 Hb_002445_020--Hb_042123_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0106843 2.51475 2.42373 14.356 0.00807162 0.0320815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0391631 0.0308161 0.0293128 0.349013 52.2842

CAGE analysis