Hb_018487_040

Information

Type -
Description -
Location Contig18487: 13166-14656
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13510g
description POPTRDRAFT_566626; ECERIFERUM 6 family protein
nr
ID XP_012082087.1
description PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
swissprot
ID Q9XF43
description 3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=1 SV=1
trembl
ID A0A067K2Y2
description 3-ketoacyl-CoA synthase OS=Jatropha curcas GN=JCGZ_18324 PE=3 SV=1
Gene Ontology
ID GO:0016020
description 3-ketoacyl- synthase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 005_H19.ab1: 13915-14742 , 013_E13.ab1: 14050-14742 , 017_F08.ab1: 14021-14742 , 029_K17.ab1: 14133-14742 , 041_N16.ab1: 13980-14742

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018487_040 0.0 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
2 Hb_002675_220 0.0479543841 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
3 Hb_002250_040 0.0507600116 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
4 Hb_001104_070 0.0526974891 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
5 Hb_005483_040 0.0540072596 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
6 Hb_002329_050 0.0619880913 - - conserved hypothetical protein [Ricinus communis]
7 Hb_080048_030 0.0631769803 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
8 Hb_000883_080 0.0646634968 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_005675_030 0.0713071266 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
10 Hb_169492_010 0.073365104 - - PREDICTED: expansin-like B1 [Jatropha curcas]
11 Hb_001488_160 0.0765421392 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
12 Hb_005062_100 0.077986188 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
13 Hb_000260_520 0.0814338789 - - receptor protein kinase, putative [Ricinus communis]
14 Hb_189208_080 0.0829576864 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 11-like isoform X1 [Jatropha curcas]
15 Hb_011362_010 0.0840867306 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
16 Hb_018202_040 0.0843819719 - - PREDICTED: phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like [Jatropha curcas]
17 Hb_006718_030 0.086916324 - - ATPase, F1 complex, gamma subunit protein [Theobroma cacao]
18 Hb_011214_080 0.0917743505 - - sucrose synthase 1 [Hevea brasiliensis]
19 Hb_011537_130 0.0925211117 - - unnamed protein product [Vitis vinifera]
20 Hb_022832_050 0.0930595463 - - PREDICTED: protein argonaute 16 isoform X1 [Sesamum indicum]

Gene co-expression network

sample Hb_018487_040 Hb_018487_040 Hb_002675_220 Hb_002675_220 Hb_018487_040--Hb_002675_220 Hb_002250_040 Hb_002250_040 Hb_018487_040--Hb_002250_040 Hb_001104_070 Hb_001104_070 Hb_018487_040--Hb_001104_070 Hb_005483_040 Hb_005483_040 Hb_018487_040--Hb_005483_040 Hb_002329_050 Hb_002329_050 Hb_018487_040--Hb_002329_050 Hb_080048_030 Hb_080048_030 Hb_018487_040--Hb_080048_030 Hb_002675_220--Hb_002250_040 Hb_002675_220--Hb_001104_070 Hb_189208_080 Hb_189208_080 Hb_002675_220--Hb_189208_080 Hb_002675_220--Hb_080048_030 Hb_002675_220--Hb_005483_040 Hb_002250_040--Hb_005483_040 Hb_000540_080 Hb_000540_080 Hb_002250_040--Hb_000540_080 Hb_002250_040--Hb_001104_070 Hb_005062_100 Hb_005062_100 Hb_002250_040--Hb_005062_100 Hb_001104_070--Hb_080048_030 Hb_001104_070--Hb_189208_080 Hb_140595_030 Hb_140595_030 Hb_001104_070--Hb_140595_030 Hb_005483_040--Hb_002329_050 Hb_000883_080 Hb_000883_080 Hb_005483_040--Hb_000883_080 Hb_006718_030 Hb_006718_030 Hb_005483_040--Hb_006718_030 Hb_011362_010 Hb_011362_010 Hb_005483_040--Hb_011362_010 Hb_000268_050 Hb_000268_050 Hb_002329_050--Hb_000268_050 Hb_002329_050--Hb_000883_080 Hb_002329_050--Hb_011362_010 Hb_000928_260 Hb_000928_260 Hb_002329_050--Hb_000928_260 Hb_169492_010 Hb_169492_010 Hb_080048_030--Hb_169492_010 Hb_005675_030 Hb_005675_030 Hb_080048_030--Hb_005675_030 Hb_080048_030--Hb_189208_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 12.2472 59.544 157.685 0 0.0415331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0314462 0.0742185 0 2.62698 452.909

CAGE analysis