Hb_005062_100

Information

Type -
Description -
Location Contig5062: 79680-80120
Sequence    

Annotation

kegg
ID rcu:RCOM_0321060
description Ferredoxin-2, chloroplast precursor, putative
nr
ID XP_002530673.1
description Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9ZTS2
description Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1
trembl
ID B9SXF4
description Ferredoxin-2, chloroplast, putative OS=Ricinus communis GN=RCOM_0321060 PE=4 SV=1
Gene Ontology
ID GO:0009055
description ferredoxin- chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46123: 79415-80193
cDNA
(Sanger)
(ID:Location)		 002_J19.ab1: 79512-80164 , 005_B09.ab1: 79562-80164 , 006_A04.ab1: 79512-80164 , 014_B18.ab1: 79506-80164 , 021_I18.ab1: 79512-80164 , 022_O13.ab1: 79775-80164 , 025_G09.ab1: 79500-80164 , 026_K18.ab1: 79525-80164 , 029_H07.ab1: 79506-80164 , 030_H22.ab1: 79507-80164 , 032_C04.ab1: 79512-80164 , 034_L15.ab1: 79506-80164 , 037_I24.ab1: 79589-80164 , 038_G04.ab1: 79512-80193 , 038_P18.ab1: 79509-80164 , 039_O23.ab1: 79507-80164 , 043_H22.ab1: 79512-80164 , 048_A08.ab1: 79509-80164 , 052_H24.ab1: 79512-80174 , 053_F13.ab1: 79509-80164 , 053_H13.ab1: 79524-80193 , 053_I09.ab1: 79515-80164

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005062_100 0.0 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
2 Hb_000029_210 0.0574264255 - - protein binding protein, putative [Ricinus communis]
3 Hb_008518_060 0.0703743895 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
4 Hb_000023_100 0.0704263276 - - Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
5 Hb_011362_010 0.0742305277 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
6 Hb_000260_520 0.0743021159 - - receptor protein kinase, putative [Ricinus communis]
7 Hb_000739_280 0.0771159029 - - alcohol dehydrogenase, putative [Ricinus communis]
8 Hb_000538_110 0.0777215228 - - sucrose synthase 1 [Hevea brasiliensis]
9 Hb_018487_040 0.077986188 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
10 Hb_002250_040 0.0780907051 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
11 Hb_023342_010 0.0797286583 - - -
12 Hb_001097_030 0.0828610022 - - nuclear transport factor, putative [Ricinus communis]
13 Hb_144550_010 0.0835362584 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
14 Hb_005483_040 0.0863511982 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
15 Hb_002675_220 0.0865632893 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
16 Hb_002329_050 0.0881858543 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000540_080 0.0897054455 - - PREDICTED: laccase-17 [Jatropha curcas]
18 Hb_001163_010 0.0919344377 - - PREDICTED: syncoilin [Jatropha curcas]
19 Hb_001053_120 0.0940476785 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]
20 Hb_002170_030 0.0946811452 - - PREDICTED: laccase-4-like [Jatropha curcas]

Gene co-expression network

sample Hb_005062_100 Hb_005062_100 Hb_000029_210 Hb_000029_210 Hb_005062_100--Hb_000029_210 Hb_008518_060 Hb_008518_060 Hb_005062_100--Hb_008518_060 Hb_000023_100 Hb_000023_100 Hb_005062_100--Hb_000023_100 Hb_011362_010 Hb_011362_010 Hb_005062_100--Hb_011362_010 Hb_000260_520 Hb_000260_520 Hb_005062_100--Hb_000260_520 Hb_000739_280 Hb_000739_280 Hb_005062_100--Hb_000739_280 Hb_000029_210--Hb_008518_060 Hb_001163_010 Hb_001163_010 Hb_000029_210--Hb_001163_010 Hb_001053_120 Hb_001053_120 Hb_000029_210--Hb_001053_120 Hb_001097_030 Hb_001097_030 Hb_000029_210--Hb_001097_030 Hb_023342_010 Hb_023342_010 Hb_000029_210--Hb_023342_010 Hb_008518_060--Hb_001053_120 Hb_008518_060--Hb_001163_010 Hb_001397_020 Hb_001397_020 Hb_008518_060--Hb_001397_020 Hb_002170_030 Hb_002170_030 Hb_008518_060--Hb_002170_030 Hb_000023_100--Hb_023342_010 Hb_003786_030 Hb_003786_030 Hb_000023_100--Hb_003786_030 Hb_000023_100--Hb_001053_120 Hb_002973_060 Hb_002973_060 Hb_000023_100--Hb_002973_060 Hb_009158_040 Hb_009158_040 Hb_000023_100--Hb_009158_040 Hb_135887_010 Hb_135887_010 Hb_000023_100--Hb_135887_010 Hb_000268_050 Hb_000268_050 Hb_011362_010--Hb_000268_050 Hb_002329_050 Hb_002329_050 Hb_011362_010--Hb_002329_050 Hb_000540_080 Hb_000540_080 Hb_011362_010--Hb_000540_080 Hb_000883_080 Hb_000883_080 Hb_011362_010--Hb_000883_080 Hb_000160_120 Hb_000160_120 Hb_011362_010--Hb_000160_120 Hb_096907_010 Hb_096907_010 Hb_011362_010--Hb_096907_010 Hb_140595_020 Hb_140595_020 Hb_000260_520--Hb_140595_020 Hb_001104_070 Hb_001104_070 Hb_000260_520--Hb_001104_070 Hb_140595_030 Hb_140595_030 Hb_000260_520--Hb_140595_030 Hb_018487_040 Hb_018487_040 Hb_000260_520--Hb_018487_040 Hb_002119_150 Hb_002119_150 Hb_000260_520--Hb_002119_150 Hb_001488_160 Hb_001488_160 Hb_000739_280--Hb_001488_160 Hb_005066_040 Hb_005066_040 Hb_000739_280--Hb_005066_040 Hb_000002_110 Hb_000002_110 Hb_000739_280--Hb_000002_110 Hb_001699_110 Hb_001699_110 Hb_000739_280--Hb_001699_110 Hb_000739_280--Hb_000260_520
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0705739 100.404 631.745 2140.78 0 1.64278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.66182 0.261346 0.430068 18.8451 4079.67

CAGE analysis