Hb_001699_110

Information

Type -
Description -
Location Contig1699: 84440-86061
Sequence    

Annotation

kegg
ID rcu:RCOM_0573380
description Zeamatin precursor, putative
nr
ID XP_012065992.1
description PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
swissprot
ID P28493
description Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1
trembl
ID A0A067LE89
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06554 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15795: 84279-85976
cDNA
(Sanger)
(ID:Location)		 034_D03.ab1: 85044-85976 , 036_A06.ab1: 85139-85976

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001699_110 0.0 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
2 Hb_001488_160 0.0698198101 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
3 Hb_005675_030 0.077697286 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
4 Hb_000958_090 0.0793635786 - - PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]
5 Hb_006291_050 0.0821576533 - - PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_000389_170 0.0847872521 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
7 Hb_005843_010 0.0935017163 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
8 Hb_000708_020 0.0937318785 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_011537_130 0.0944420252 - - unnamed protein product [Vitis vinifera]
10 Hb_005111_040 0.0944704484 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
11 Hb_009315_010 0.0945309474 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
12 Hb_000739_280 0.0956336259 - - alcohol dehydrogenase, putative [Ricinus communis]
13 Hb_003925_120 0.0963939766 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
14 Hb_009193_070 0.096617345 - - fatty acid elongase 3-ketoacyl-CoA synthase 1 [Arabidopsis thaliana]
15 Hb_008727_060 0.0987919044 - - Beta-glucosidase, putative [Ricinus communis]
16 Hb_001711_140 0.1014318788 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
17 Hb_026549_060 0.1026543322 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
18 Hb_000608_190 0.1042844831 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]
19 Hb_002421_150 0.1072491808 - - hypothetical protein PRUPE_ppa020511mg [Prunus persica]
20 Hb_005010_030 0.1073388656 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001699_110 Hb_001699_110 Hb_001488_160 Hb_001488_160 Hb_001699_110--Hb_001488_160 Hb_005675_030 Hb_005675_030 Hb_001699_110--Hb_005675_030 Hb_000958_090 Hb_000958_090 Hb_001699_110--Hb_000958_090 Hb_006291_050 Hb_006291_050 Hb_001699_110--Hb_006291_050 Hb_000389_170 Hb_000389_170 Hb_001699_110--Hb_000389_170 Hb_005843_010 Hb_005843_010 Hb_001699_110--Hb_005843_010 Hb_001488_160--Hb_005675_030 Hb_018487_040 Hb_018487_040 Hb_001488_160--Hb_018487_040 Hb_011537_130 Hb_011537_130 Hb_001488_160--Hb_011537_130 Hb_080048_030 Hb_080048_030 Hb_001488_160--Hb_080048_030 Hb_000739_280 Hb_000739_280 Hb_001488_160--Hb_000739_280 Hb_005675_030--Hb_011537_130 Hb_018202_040 Hb_018202_040 Hb_005675_030--Hb_018202_040 Hb_005675_030--Hb_080048_030 Hb_005675_030--Hb_018487_040 Hb_169492_010 Hb_169492_010 Hb_005675_030--Hb_169492_010 Hb_026549_060 Hb_026549_060 Hb_000958_090--Hb_026549_060 Hb_000424_140 Hb_000424_140 Hb_000958_090--Hb_000424_140 Hb_001047_210 Hb_001047_210 Hb_000958_090--Hb_001047_210 Hb_004835_020 Hb_004835_020 Hb_000958_090--Hb_004835_020 Hb_173387_010 Hb_173387_010 Hb_000958_090--Hb_173387_010 Hb_005569_010 Hb_005569_010 Hb_000958_090--Hb_005569_010 Hb_005111_040 Hb_005111_040 Hb_006291_050--Hb_005111_040 Hb_131466_010 Hb_131466_010 Hb_006291_050--Hb_131466_010 Hb_009193_070 Hb_009193_070 Hb_006291_050--Hb_009193_070 Hb_002042_210 Hb_002042_210 Hb_006291_050--Hb_002042_210 Hb_006573_240 Hb_006573_240 Hb_006291_050--Hb_006573_240 Hb_044478_010 Hb_044478_010 Hb_006291_050--Hb_044478_010 Hb_008727_060 Hb_008727_060 Hb_000389_170--Hb_008727_060 Hb_020367_040 Hb_020367_040 Hb_000389_170--Hb_020367_040 Hb_000708_020 Hb_000708_020 Hb_000389_170--Hb_000708_020 Hb_002421_150 Hb_002421_150 Hb_000389_170--Hb_002421_150 Hb_005288_100 Hb_005288_100 Hb_000389_170--Hb_005288_100 Hb_005678_020 Hb_005678_020 Hb_005843_010--Hb_005678_020 Hb_000462_010 Hb_000462_010 Hb_005843_010--Hb_000462_010 Hb_009315_010 Hb_009315_010 Hb_005843_010--Hb_009315_010 Hb_005010_030 Hb_005010_030 Hb_005843_010--Hb_005010_030 Hb_005843_010--Hb_000708_020 Hb_005066_040 Hb_005066_040 Hb_005843_010--Hb_005066_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 11.3403 30.9131 53.6086 0 0.0169969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0295299 0 1.78416 131.609

CAGE analysis