Hb_008727_060

Information

Type -
Description -
Location Contig8727: 45268-48531
Sequence    

Annotation

kegg
ID rcu:RCOM_0175560
description Beta-glucosidase, putative (EC:3.2.1.21)
nr
ID XP_002527511.1
description Beta-glucosidase, putative [Ricinus communis]
swissprot
ID Q9LJN4
description Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2
trembl
ID B9SNE2
description Beta-glucosidase, putative OS=Ricinus communis GN=RCOM_0175560 PE=4 SV=1
Gene Ontology
ID GO:0004553
description probable beta-d-xylosidase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61213: 45852-46486 , PASA_asmbl_61215: 47144-47526 , PASA_asmbl_61216: 47624-48193
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008727_060 0.0 - - Beta-glucosidase, putative [Ricinus communis]
2 Hb_000389_170 0.0721733509 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
3 Hb_009315_010 0.0859326001 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
4 Hb_005288_100 0.0887089179 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
5 Hb_036790_110 0.0887974234 - - hypothetical protein JCGZ_22271 [Jatropha curcas]
6 Hb_005843_010 0.0946904984 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
7 Hb_001699_110 0.0987919044 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
8 Hb_000260_520 0.0994634823 - - receptor protein kinase, putative [Ricinus communis]
9 Hb_001186_040 0.1025635244 - - Peroxidase 3 precursor, putative [Ricinus communis]
10 Hb_140595_020 0.1038224424 - - PREDICTED: vegetative cell wall protein gp1-like [Solanum lycopersicum]
11 Hb_005066_040 0.1099785066 - - Reticuline oxidase precursor, putative [Ricinus communis]
12 Hb_000708_020 0.1123317889 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
13 Hb_000230_490 0.1151176323 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005678_020 0.115199608 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_001488_160 0.1157446667 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
16 Hb_000134_080 0.1164848296 - - synaptotagmin, putative [Ricinus communis]
17 Hb_001269_540 0.1166672219 - - hypothetical protein VITISV_038016 [Vitis vinifera]
18 Hb_000661_270 0.1254138697 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
19 Hb_007718_040 0.1255345223 - - hypothetical protein PRUPE_ppb025054mg [Prunus persica]
20 Hb_000462_010 0.1268737251 - - hypothetical protein VITISV_041696 [Vitis vinifera]

Gene co-expression network

sample Hb_008727_060 Hb_008727_060 Hb_000389_170 Hb_000389_170 Hb_008727_060--Hb_000389_170 Hb_009315_010 Hb_009315_010 Hb_008727_060--Hb_009315_010 Hb_005288_100 Hb_005288_100 Hb_008727_060--Hb_005288_100 Hb_036790_110 Hb_036790_110 Hb_008727_060--Hb_036790_110 Hb_005843_010 Hb_005843_010 Hb_008727_060--Hb_005843_010 Hb_001699_110 Hb_001699_110 Hb_008727_060--Hb_001699_110 Hb_000389_170--Hb_001699_110 Hb_020367_040 Hb_020367_040 Hb_000389_170--Hb_020367_040 Hb_000708_020 Hb_000708_020 Hb_000389_170--Hb_000708_020 Hb_002421_150 Hb_002421_150 Hb_000389_170--Hb_002421_150 Hb_000389_170--Hb_005288_100 Hb_001711_140 Hb_001711_140 Hb_009315_010--Hb_001711_140 Hb_000462_010 Hb_000462_010 Hb_009315_010--Hb_000462_010 Hb_009315_010--Hb_005843_010 Hb_005678_020 Hb_005678_020 Hb_009315_010--Hb_005678_020 Hb_009315_010--Hb_036790_110 Hb_005010_030 Hb_005010_030 Hb_009315_010--Hb_005010_030 Hb_005288_100--Hb_036790_110 Hb_005288_100--Hb_005678_020 Hb_005288_100--Hb_009315_010 Hb_005288_100--Hb_005843_010 Hb_036790_110--Hb_005678_020 Hb_036790_110--Hb_000462_010 Hb_036790_110--Hb_005843_010 Hb_003008_020 Hb_003008_020 Hb_036790_110--Hb_003008_020 Hb_005843_010--Hb_005678_020 Hb_005843_010--Hb_000462_010 Hb_005843_010--Hb_005010_030 Hb_005843_010--Hb_000708_020 Hb_005066_040 Hb_005066_040 Hb_005843_010--Hb_005066_040 Hb_001488_160 Hb_001488_160 Hb_001699_110--Hb_001488_160 Hb_005675_030 Hb_005675_030 Hb_001699_110--Hb_005675_030 Hb_000958_090 Hb_000958_090 Hb_001699_110--Hb_000958_090 Hb_006291_050 Hb_006291_050 Hb_001699_110--Hb_006291_050 Hb_001699_110--Hb_005843_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.045817 2.065 2.39514 6.68419 0 0.0132098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0160514 0 0.0241215 0.0250635 16.0862

CAGE analysis