Hb_000389_170

Information

Type -
Description -
Location Contig389: 375552-378934
Sequence    

Annotation

kegg
ID rcu:RCOM_1515790
description hypothetical protein
nr
ID XP_012070312.1
description PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID B9SDB3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1515790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38968: 375711-377050 , PASA_asmbl_38969: 377075-377473
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000389_170 0.0 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
2 Hb_008727_060 0.0721733509 - - Beta-glucosidase, putative [Ricinus communis]
3 Hb_001699_110 0.0847872521 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
4 Hb_020367_040 0.08828039 - - hypothetical protein JCGZ_01061 [Jatropha curcas]
5 Hb_000708_020 0.0927481125 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
6 Hb_002421_150 0.0947464239 - - hypothetical protein PRUPE_ppa020511mg [Prunus persica]
7 Hb_005288_100 0.101371729 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
8 Hb_000826_010 0.1051368694 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002226_090 0.1068085715 - - Stachyose synthase precursor, putative [Ricinus communis]
10 Hb_005675_030 0.1111766928 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
11 Hb_005843_010 0.111337403 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
12 Hb_011537_130 0.1129933957 - - unnamed protein product [Vitis vinifera]
13 Hb_001488_160 0.1133068177 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
14 Hb_057880_020 0.1160464118 - - PREDICTED: receptor-like protein kinase HSL1, partial [Jatropha curcas]
15 Hb_002701_250 0.1174988001 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
16 Hb_036790_110 0.1197552317 - - hypothetical protein JCGZ_22271 [Jatropha curcas]
17 Hb_004128_170 0.1202509087 - - hypothetical protein POPTR_0016s08350g [Populus trichocarpa]
18 Hb_004291_030 0.120919342 - - PREDICTED: MATE efflux family protein 9-like [Jatropha curcas]
19 Hb_018202_040 0.1209494554 - - PREDICTED: phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like [Jatropha curcas]
20 Hb_009315_010 0.1231603767 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_000389_170 Hb_000389_170 Hb_008727_060 Hb_008727_060 Hb_000389_170--Hb_008727_060 Hb_001699_110 Hb_001699_110 Hb_000389_170--Hb_001699_110 Hb_020367_040 Hb_020367_040 Hb_000389_170--Hb_020367_040 Hb_000708_020 Hb_000708_020 Hb_000389_170--Hb_000708_020 Hb_002421_150 Hb_002421_150 Hb_000389_170--Hb_002421_150 Hb_005288_100 Hb_005288_100 Hb_000389_170--Hb_005288_100 Hb_009315_010 Hb_009315_010 Hb_008727_060--Hb_009315_010 Hb_008727_060--Hb_005288_100 Hb_036790_110 Hb_036790_110 Hb_008727_060--Hb_036790_110 Hb_005843_010 Hb_005843_010 Hb_008727_060--Hb_005843_010 Hb_008727_060--Hb_001699_110 Hb_001488_160 Hb_001488_160 Hb_001699_110--Hb_001488_160 Hb_005675_030 Hb_005675_030 Hb_001699_110--Hb_005675_030 Hb_000958_090 Hb_000958_090 Hb_001699_110--Hb_000958_090 Hb_006291_050 Hb_006291_050 Hb_001699_110--Hb_006291_050 Hb_001699_110--Hb_005843_010 Hb_002226_090 Hb_002226_090 Hb_020367_040--Hb_002226_090 Hb_057880_020 Hb_057880_020 Hb_020367_040--Hb_057880_020 Hb_002701_250 Hb_002701_250 Hb_020367_040--Hb_002701_250 Hb_007904_110 Hb_007904_110 Hb_020367_040--Hb_007904_110 Hb_000081_110 Hb_000081_110 Hb_020367_040--Hb_000081_110 Hb_000708_020--Hb_005843_010 Hb_005678_020 Hb_005678_020 Hb_000708_020--Hb_005678_020 Hb_005914_160 Hb_005914_160 Hb_000708_020--Hb_005914_160 Hb_000708_020--Hb_001699_110 Hb_000462_010 Hb_000462_010 Hb_000708_020--Hb_000462_010 Hb_000826_010 Hb_000826_010 Hb_002421_150--Hb_000826_010 Hb_000373_160 Hb_000373_160 Hb_002421_150--Hb_000373_160 Hb_002421_150--Hb_002701_250 Hb_000329_430 Hb_000329_430 Hb_002421_150--Hb_000329_430 Hb_003925_120 Hb_003925_120 Hb_002421_150--Hb_003925_120 Hb_001269_030 Hb_001269_030 Hb_002421_150--Hb_001269_030 Hb_005288_100--Hb_036790_110 Hb_005288_100--Hb_005678_020 Hb_005288_100--Hb_009315_010 Hb_005288_100--Hb_005843_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0448761 4.29136 6.23821 10.4205 0.0175371 0.0165439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0411224 0.0808931 0.0307462 0.173655 32.353

CAGE analysis