Hb_002226_090

Information

Type -
Description -
Location Contig2226: 112987-116447
Sequence    

Annotation

kegg
ID rcu:RCOM_1095590
description Stachyose synthase precursor, putative (EC:2.4.1.67)
nr
ID XP_002524657.1
description Stachyose synthase precursor, putative [Ricinus communis]
swissprot
ID Q9FND9
description Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1
trembl
ID B9SF88
description Stachyose synthase, putative OS=Ricinus communis GN=RCOM_1095590 PE=4 SV=1
Gene Ontology
ID GO:0009507
description raffinose synthase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23062: 113290-113470 , PASA_asmbl_23063: 113722-116483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002226_090 0.0 - - Stachyose synthase precursor, putative [Ricinus communis]
2 Hb_020367_040 0.0707951457 - - hypothetical protein JCGZ_01061 [Jatropha curcas]
3 Hb_010402_040 0.0739760324 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
4 Hb_004117_320 0.0761830963 - - PREDICTED: probable serine/threonine-protein kinase WNK5 [Jatropha curcas]
5 Hb_007904_110 0.0902077078 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
6 Hb_004291_050 0.0971159985 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
7 Hb_004979_080 0.0993642784 - - kinase, putative [Ricinus communis]
8 Hb_004979_070 0.09942766 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
9 Hb_005867_050 0.1013188791 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
10 Hb_057880_020 0.1036302256 - - PREDICTED: receptor-like protein kinase HSL1, partial [Jatropha curcas]
11 Hb_000389_170 0.1068085715 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
12 Hb_119600_030 0.1082078667 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
13 Hb_000462_160 0.1091144459 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_004291_030 0.1093639332 - - PREDICTED: MATE efflux family protein 9-like [Jatropha curcas]
15 Hb_004934_130 0.110612492 - - 12-oxophytodienoate reductase 2 isoform 1 [Theobroma cacao]
16 Hb_001541_280 0.1118817256 - - phosphate transporter [Manihot esculenta]
17 Hb_027337_130 0.1136140533 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
18 Hb_002701_250 0.1148765883 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
19 Hb_000081_110 0.1165893034 - - nitrate transporter, putative [Ricinus communis]
20 Hb_066293_010 0.1166086818 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]

Gene co-expression network

sample Hb_002226_090 Hb_002226_090 Hb_020367_040 Hb_020367_040 Hb_002226_090--Hb_020367_040 Hb_010402_040 Hb_010402_040 Hb_002226_090--Hb_010402_040 Hb_004117_320 Hb_004117_320 Hb_002226_090--Hb_004117_320 Hb_007904_110 Hb_007904_110 Hb_002226_090--Hb_007904_110 Hb_004291_050 Hb_004291_050 Hb_002226_090--Hb_004291_050 Hb_004979_080 Hb_004979_080 Hb_002226_090--Hb_004979_080 Hb_057880_020 Hb_057880_020 Hb_020367_040--Hb_057880_020 Hb_002701_250 Hb_002701_250 Hb_020367_040--Hb_002701_250 Hb_020367_040--Hb_007904_110 Hb_000081_110 Hb_000081_110 Hb_020367_040--Hb_000081_110 Hb_000389_170 Hb_000389_170 Hb_020367_040--Hb_000389_170 Hb_010402_040--Hb_004117_320 Hb_000951_070 Hb_000951_070 Hb_010402_040--Hb_000951_070 Hb_005867_050 Hb_005867_050 Hb_010402_040--Hb_005867_050 Hb_010402_040--Hb_020367_040 Hb_000668_180 Hb_000668_180 Hb_010402_040--Hb_000668_180 Hb_004117_320--Hb_005867_050 Hb_022693_080 Hb_022693_080 Hb_004117_320--Hb_022693_080 Hb_004117_320--Hb_004979_080 Hb_004117_320--Hb_004291_050 Hb_004979_070 Hb_004979_070 Hb_007904_110--Hb_004979_070 Hb_096224_050 Hb_096224_050 Hb_007904_110--Hb_096224_050 Hb_005305_070 Hb_005305_070 Hb_007904_110--Hb_005305_070 Hb_119600_030 Hb_119600_030 Hb_007904_110--Hb_119600_030 Hb_025557_060 Hb_025557_060 Hb_007904_110--Hb_025557_060 Hb_007904_110--Hb_004979_080 Hb_004291_050--Hb_004979_080 Hb_004291_050--Hb_004979_070 Hb_000011_440 Hb_000011_440 Hb_004291_050--Hb_000011_440 Hb_004291_050--Hb_007904_110 Hb_000644_010 Hb_000644_010 Hb_004291_050--Hb_000644_010 Hb_027337_130 Hb_027337_130 Hb_004291_050--Hb_027337_130 Hb_004979_080--Hb_096224_050 Hb_004979_080--Hb_000644_010 Hb_004979_080--Hb_004979_070 Hb_033363_030 Hb_033363_030 Hb_004979_080--Hb_033363_030 Hb_004979_080--Hb_000668_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0795678 11.0933 15.0751 15.207 0.0338002 0.142178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.235931 0.222788 0.449255 2.21502 65.3171

CAGE analysis