Hb_000011_440

Information

Type -
Description -
Location Contig11: 453604-457380
Sequence    

Annotation

kegg
ID rcu:RCOM_0044330
description zinc finger protein, putative
nr
ID XP_011036528.1
description PREDICTED: GDSL esterase/lipase 1 [Populus euphratica]
swissprot
ID Q9FLN0
description GDSL esterase/lipase 1 OS=Arabidopsis thaliana GN=GLIP1 PE=1 SV=1
trembl
ID B9T4S5
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0044330 PE=4 SV=1
Gene Ontology
ID GO:0016298
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03026: 453582-455786 , PASA_asmbl_03027: 454786-454999
cDNA
(Sanger)
(ID:Location)		 030_E15.ab1: 453587-454847 , 043_I19.ab1: 453582-455043

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_440 0.0 - - PREDICTED: GDSL esterase/lipase 1 [Populus euphratica]
2 Hb_000092_060 0.0747692645 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
3 Hb_004291_050 0.0891086969 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
4 Hb_002111_010 0.0909676139 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
5 Hb_000441_080 0.0942128993 - - calmodulin binding protein, putative [Ricinus communis]
6 Hb_001300_160 0.1010937259 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
7 Hb_000483_440 0.1016923708 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002943_020 0.1052933461 - - hypothetical protein POPTR_0075s00240g, partial [Populus trichocarpa]
9 Hb_000081_110 0.1058237267 - - nitrate transporter, putative [Ricinus communis]
10 Hb_048755_030 0.1105135929 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
11 Hb_001584_050 0.1142102599 - - PREDICTED: NHL repeat-containing protein 2 isoform X1 [Jatropha curcas]
12 Hb_006915_010 0.1147818358 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
13 Hb_000107_540 0.1233262137 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
14 Hb_000017_210 0.1235744134 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
15 Hb_001579_050 0.1245917661 - - alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_007426_070 0.1251598554 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
17 Hb_001691_170 0.1254264484 - - PREDICTED: callose synthase 12-like [Glycine max]
18 Hb_027337_130 0.1260829178 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
19 Hb_004146_030 0.1270553673 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_000270_640 0.1276454711 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]

Gene co-expression network

sample Hb_000011_440 Hb_000011_440 Hb_000092_060 Hb_000092_060 Hb_000011_440--Hb_000092_060 Hb_004291_050 Hb_004291_050 Hb_000011_440--Hb_004291_050 Hb_002111_010 Hb_002111_010 Hb_000011_440--Hb_002111_010 Hb_000441_080 Hb_000441_080 Hb_000011_440--Hb_000441_080 Hb_001300_160 Hb_001300_160 Hb_000011_440--Hb_001300_160 Hb_000483_440 Hb_000483_440 Hb_000011_440--Hb_000483_440 Hb_000092_060--Hb_001300_160 Hb_006915_010 Hb_006915_010 Hb_000092_060--Hb_006915_010 Hb_000914_190 Hb_000914_190 Hb_000092_060--Hb_000914_190 Hb_001584_050 Hb_001584_050 Hb_000092_060--Hb_001584_050 Hb_000092_060--Hb_004291_050 Hb_004979_080 Hb_004979_080 Hb_004291_050--Hb_004979_080 Hb_004979_070 Hb_004979_070 Hb_004291_050--Hb_004979_070 Hb_007904_110 Hb_007904_110 Hb_004291_050--Hb_007904_110 Hb_000644_010 Hb_000644_010 Hb_004291_050--Hb_000644_010 Hb_027337_130 Hb_027337_130 Hb_004291_050--Hb_027337_130 Hb_002111_010--Hb_000441_080 Hb_077151_010 Hb_077151_010 Hb_002111_010--Hb_077151_010 Hb_048755_030 Hb_048755_030 Hb_002111_010--Hb_048755_030 Hb_001579_050 Hb_001579_050 Hb_002111_010--Hb_001579_050 Hb_000139_030 Hb_000139_030 Hb_002111_010--Hb_000139_030 Hb_000441_080--Hb_077151_010 Hb_168319_040 Hb_168319_040 Hb_000441_080--Hb_168319_040 Hb_000441_080--Hb_000139_030 Hb_000081_110 Hb_000081_110 Hb_000441_080--Hb_000081_110 Hb_001345_040 Hb_001345_040 Hb_001300_160--Hb_001345_040 Hb_001300_160--Hb_002111_010 Hb_002943_020 Hb_002943_020 Hb_001300_160--Hb_002943_020 Hb_001300_160--Hb_001584_050 Hb_000017_210 Hb_000017_210 Hb_000483_440--Hb_000017_210 Hb_007426_070 Hb_007426_070 Hb_000483_440--Hb_007426_070 Hb_000694_080 Hb_000694_080 Hb_000483_440--Hb_000694_080 Hb_000483_440--Hb_000081_110 Hb_004146_030 Hb_004146_030 Hb_000483_440--Hb_004146_030 Hb_005305_070 Hb_005305_070 Hb_000483_440--Hb_005305_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.272219 4.36218 11.1018 6.39681 0.0522156 0.279331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0199561 0.0157027 0 3.96928 39.912

CAGE analysis