Hb_001300_160

Information

Type -
Description -
Location Contig1300: 120941-125822
Sequence    

Annotation

kegg
ID rcu:RCOM_0556490
description sodium/hydrogen exchanger, putative
nr
ID XP_012082662.1
description PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
swissprot
ID Q56XP4
description Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana GN=NHX2 PE=2 SV=2
trembl
ID A0A067JW08
description Sodium/hydrogen exchanger OS=Jatropha curcas GN=JCGZ_13853 PE=3 SV=1
Gene Ontology
ID GO:0005774
description sodium hydrogen exchanger 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08978: 123081-123345
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001300_160 0.0 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
2 Hb_000092_060 0.0864584089 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
3 Hb_000011_440 0.1010937259 - - PREDICTED: GDSL esterase/lipase 1 [Populus euphratica]
4 Hb_001345_040 0.128503307 - - hypothetical protein VITISV_015004 [Vitis vinifera]
5 Hb_002111_010 0.1287227507 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
6 Hb_002943_020 0.1289456106 - - hypothetical protein POPTR_0075s00240g, partial [Populus trichocarpa]
7 Hb_001584_050 0.129401515 - - PREDICTED: NHL repeat-containing protein 2 isoform X1 [Jatropha curcas]
8 Hb_001652_130 0.1295331551 - - hypothetical protein B456_002G193900 [Gossypium raimondii]
9 Hb_000441_080 0.1298203504 - - calmodulin binding protein, putative [Ricinus communis]
10 Hb_000608_360 0.1304047404 - - calreticulin, putative [Ricinus communis]
11 Hb_006915_010 0.137857717 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
12 Hb_001377_210 0.1396626041 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
13 Hb_027337_130 0.1402716312 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
14 Hb_000107_540 0.1406801019 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
15 Hb_000638_100 0.1410245022 - - PREDICTED: histone deacetylase 14 [Jatropha curcas]
16 Hb_015824_010 0.1428920916 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
17 Hb_002122_070 0.1429585813 - - unnamed protein product [Vitis vinifera]
18 Hb_015978_090 0.144056304 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
19 Hb_000914_190 0.1450829013 - - xanthine dehydrogenase, putative [Ricinus communis]
20 Hb_000081_110 0.1457967212 - - nitrate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001300_160 Hb_001300_160 Hb_000092_060 Hb_000092_060 Hb_001300_160--Hb_000092_060 Hb_000011_440 Hb_000011_440 Hb_001300_160--Hb_000011_440 Hb_001345_040 Hb_001345_040 Hb_001300_160--Hb_001345_040 Hb_002111_010 Hb_002111_010 Hb_001300_160--Hb_002111_010 Hb_002943_020 Hb_002943_020 Hb_001300_160--Hb_002943_020 Hb_001584_050 Hb_001584_050 Hb_001300_160--Hb_001584_050 Hb_000092_060--Hb_000011_440 Hb_006915_010 Hb_006915_010 Hb_000092_060--Hb_006915_010 Hb_000914_190 Hb_000914_190 Hb_000092_060--Hb_000914_190 Hb_000092_060--Hb_001584_050 Hb_004291_050 Hb_004291_050 Hb_000092_060--Hb_004291_050 Hb_000011_440--Hb_004291_050 Hb_000011_440--Hb_002111_010 Hb_000441_080 Hb_000441_080 Hb_000011_440--Hb_000441_080 Hb_000483_440 Hb_000483_440 Hb_000011_440--Hb_000483_440 Hb_006588_020 Hb_006588_020 Hb_001345_040--Hb_006588_020 Hb_188075_010 Hb_188075_010 Hb_001345_040--Hb_188075_010 Hb_005092_090 Hb_005092_090 Hb_001345_040--Hb_005092_090 Hb_000352_060 Hb_000352_060 Hb_001345_040--Hb_000352_060 Hb_004312_020 Hb_004312_020 Hb_001345_040--Hb_004312_020 Hb_006787_070 Hb_006787_070 Hb_001345_040--Hb_006787_070 Hb_002111_010--Hb_000441_080 Hb_077151_010 Hb_077151_010 Hb_002111_010--Hb_077151_010 Hb_048755_030 Hb_048755_030 Hb_002111_010--Hb_048755_030 Hb_001579_050 Hb_001579_050 Hb_002111_010--Hb_001579_050 Hb_000139_030 Hb_000139_030 Hb_002111_010--Hb_000139_030 Hb_000705_040 Hb_000705_040 Hb_002943_020--Hb_000705_040 Hb_000675_010 Hb_000675_010 Hb_002943_020--Hb_000675_010 Hb_000270_640 Hb_000270_640 Hb_002943_020--Hb_000270_640 Hb_004979_070 Hb_004979_070 Hb_002943_020--Hb_004979_070 Hb_002073_150 Hb_002073_150 Hb_002943_020--Hb_002073_150 Hb_007904_110 Hb_007904_110 Hb_002943_020--Hb_007904_110 Hb_000107_540 Hb_000107_540 Hb_001584_050--Hb_000107_540 Hb_010080_070 Hb_010080_070 Hb_001584_050--Hb_010080_070 Hb_001377_210 Hb_001377_210 Hb_001584_050--Hb_001377_210 Hb_002333_040 Hb_002333_040 Hb_001584_050--Hb_002333_040 Hb_001257_110 Hb_001257_110 Hb_001584_050--Hb_001257_110 Hb_001584_050--Hb_000011_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.832124 2.01659 0.902546 0.048378 0.0251558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0578 0.0454744 0 1.02465 6.34368

CAGE analysis