Hb_001257_110

Information

Type -
Description -
Location Contig1257: 154863-156041
Sequence    

Annotation

kegg
ID rcu:RCOM_1282490
description hypothetical protein
nr
ID XP_012075043.1
description PREDICTED: uncharacterized protein LOC105636396 [Jatropha curcas]
swissprot
ID Q96KR6
description Protein FAM210B OS=Homo sapiens GN=FAM210B PE=1 SV=2
trembl
ID A0A067KH64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10855 PE=4 SV=1
Gene Ontology
ID GO:0009535
description protein fam210b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07851: 154666-156024 , PASA_asmbl_07853: 157023-157270
cDNA
(Sanger)
(ID:Location)		 008_H05.ab1: 155001-155981

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001257_110 0.0 - - PREDICTED: uncharacterized protein LOC105636396 [Jatropha curcas]
2 Hb_001775_100 0.0643521239 - - PREDICTED: probable 2-carboxy-D-arabinitol-1-phosphatase [Jatropha curcas]
3 Hb_005063_060 0.0921854153 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105647704 [Jatropha curcas]
4 Hb_074548_010 0.0977778912 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_002799_060 0.0988696612 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
6 Hb_005523_040 0.1108832555 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
7 Hb_003905_030 0.1112096626 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
8 Hb_005977_040 0.1120314928 - - Photosystem I reaction center subunit IV A [Medicago truncatula]
9 Hb_001584_050 0.1131554659 - - PREDICTED: NHL repeat-containing protein 2 isoform X1 [Jatropha curcas]
10 Hb_001604_100 0.1254866135 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
11 Hb_003605_060 0.1259644953 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
12 Hb_119600_030 0.1272448578 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
13 Hb_003602_030 0.1275140296 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
14 Hb_001584_210 0.1300492781 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
15 Hb_000116_090 0.1314354641 - - catalase [Hevea brasiliensis]
16 Hb_007253_030 0.1326928879 - - PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Populus euphratica]
17 Hb_000856_280 0.1335592441 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
18 Hb_001517_010 0.1335933684 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010080_070 0.1356987674 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
20 Hb_002609_140 0.1360993549 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001257_110 Hb_001257_110 Hb_001775_100 Hb_001775_100 Hb_001257_110--Hb_001775_100 Hb_005063_060 Hb_005063_060 Hb_001257_110--Hb_005063_060 Hb_074548_010 Hb_074548_010 Hb_001257_110--Hb_074548_010 Hb_002799_060 Hb_002799_060 Hb_001257_110--Hb_002799_060 Hb_005523_040 Hb_005523_040 Hb_001257_110--Hb_005523_040 Hb_003905_030 Hb_003905_030 Hb_001257_110--Hb_003905_030 Hb_001775_100--Hb_005063_060 Hb_001584_210 Hb_001584_210 Hb_001775_100--Hb_001584_210 Hb_119600_030 Hb_119600_030 Hb_001775_100--Hb_119600_030 Hb_010080_070 Hb_010080_070 Hb_001775_100--Hb_010080_070 Hb_001775_100--Hb_003905_030 Hb_002003_130 Hb_002003_130 Hb_005063_060--Hb_002003_130 Hb_005063_060--Hb_119600_030 Hb_004117_200 Hb_004117_200 Hb_005063_060--Hb_004117_200 Hb_005063_060--Hb_001584_210 Hb_003605_060 Hb_003605_060 Hb_074548_010--Hb_003605_060 Hb_002485_050 Hb_002485_050 Hb_074548_010--Hb_002485_050 Hb_074548_010--Hb_005523_040 Hb_000544_070 Hb_000544_070 Hb_074548_010--Hb_000544_070 Hb_002636_030 Hb_002636_030 Hb_074548_010--Hb_002636_030 Hb_005977_040 Hb_005977_040 Hb_074548_010--Hb_005977_040 Hb_007253_030 Hb_007253_030 Hb_002799_060--Hb_007253_030 Hb_000334_010 Hb_000334_010 Hb_002799_060--Hb_000334_010 Hb_002799_060--Hb_001775_100 Hb_001604_100 Hb_001604_100 Hb_002799_060--Hb_001604_100 Hb_031069_040 Hb_031069_040 Hb_002799_060--Hb_031069_040 Hb_001517_010 Hb_001517_010 Hb_005523_040--Hb_001517_010 Hb_005210_010 Hb_005210_010 Hb_005523_040--Hb_005210_010 Hb_000856_280 Hb_000856_280 Hb_005523_040--Hb_000856_280 Hb_005348_120 Hb_005348_120 Hb_005523_040--Hb_005348_120 Hb_001195_290 Hb_001195_290 Hb_005523_040--Hb_001195_290 Hb_003905_030--Hb_010080_070 Hb_000360_010 Hb_000360_010 Hb_003905_030--Hb_000360_010 Hb_156850_020 Hb_156850_020 Hb_003905_030--Hb_156850_020 Hb_000103_240 Hb_000103_240 Hb_003905_030--Hb_000103_240 Hb_011900_020 Hb_011900_020 Hb_003905_030--Hb_011900_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.88777 63.9484 170.354 63.6503 5.29556 8.03352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.83492 4.94036 2.11191 6.3264 423.452

CAGE analysis