Hb_003905_030

Information

Type -
Description -
Location Contig3905: 56534-72342
Sequence    

Annotation

kegg
ID rcu:RCOM_1404940
description eukaryotic translation initiation factor 3 subunit, putative
nr
ID XP_012071577.1
description PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
swissprot
ID F4J5S1
description Clustered mitochondria protein OS=Arabidopsis thaliana GN=FMT PE=2 SV=1
trembl
ID A0A067L3U7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04082 PE=4 SV=1
Gene Ontology
ID GO:0005515
description clustered mitochondria protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39151: 56717-72346 , PASA_asmbl_39152: 56717-64209 , PASA_asmbl_39153: 56694-59957
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003905_030 0.0 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
2 Hb_010080_070 0.1002708725 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
3 Hb_000360_010 0.1009738868 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_156850_020 0.1010626505 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
5 Hb_000103_240 0.1067474792 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 [Jatropha curcas]
6 Hb_001257_110 0.1112096626 - - PREDICTED: uncharacterized protein LOC105636396 [Jatropha curcas]
7 Hb_011900_020 0.1137057042 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
8 Hb_000049_330 0.1138466596 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
9 Hb_001775_100 0.1141265872 - - PREDICTED: probable 2-carboxy-D-arabinitol-1-phosphatase [Jatropha curcas]
10 Hb_001517_010 0.1176932868 - - conserved hypothetical protein [Ricinus communis]
11 Hb_106552_030 0.1184102127 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
12 Hb_001584_050 0.1211360353 - - PREDICTED: NHL repeat-containing protein 2 isoform X1 [Jatropha curcas]
13 Hb_000992_090 0.1244782544 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
14 Hb_000107_540 0.1308826003 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
15 Hb_000359_160 0.1366216073 - - PREDICTED: protein CAJ1 [Jatropha curcas]
16 Hb_000359_070 0.1382348166 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
17 Hb_007201_010 0.1395093738 - - PREDICTED: uncharacterized protein LOC105631226 isoform X2 [Jatropha curcas]
18 Hb_023344_040 0.1407646977 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005523_040 0.1408584762 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
20 Hb_001584_210 0.1409269449 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003905_030 Hb_003905_030 Hb_010080_070 Hb_010080_070 Hb_003905_030--Hb_010080_070 Hb_000360_010 Hb_000360_010 Hb_003905_030--Hb_000360_010 Hb_156850_020 Hb_156850_020 Hb_003905_030--Hb_156850_020 Hb_000103_240 Hb_000103_240 Hb_003905_030--Hb_000103_240 Hb_001257_110 Hb_001257_110 Hb_003905_030--Hb_001257_110 Hb_011900_020 Hb_011900_020 Hb_003905_030--Hb_011900_020 Hb_010080_070--Hb_156850_020 Hb_001517_060 Hb_001517_060 Hb_010080_070--Hb_001517_060 Hb_000009_470 Hb_000009_470 Hb_010080_070--Hb_000009_470 Hb_000992_090 Hb_000992_090 Hb_010080_070--Hb_000992_090 Hb_106552_030 Hb_106552_030 Hb_010080_070--Hb_106552_030 Hb_000107_540 Hb_000107_540 Hb_010080_070--Hb_000107_540 Hb_000360_010--Hb_011900_020 Hb_000360_010--Hb_156850_020 Hb_000360_010--Hb_106552_030 Hb_000359_070 Hb_000359_070 Hb_000360_010--Hb_000359_070 Hb_000360_010--Hb_010080_070 Hb_156850_020--Hb_106552_030 Hb_028960_010 Hb_028960_010 Hb_156850_020--Hb_028960_010 Hb_012940_020 Hb_012940_020 Hb_156850_020--Hb_012940_020 Hb_156850_020--Hb_011900_020 Hb_156850_020--Hb_000359_070 Hb_000103_240--Hb_000992_090 Hb_023344_040 Hb_023344_040 Hb_000103_240--Hb_023344_040 Hb_001135_170 Hb_001135_170 Hb_000103_240--Hb_001135_170 Hb_000103_240--Hb_106552_030 Hb_000103_240--Hb_028960_010 Hb_001775_100 Hb_001775_100 Hb_001257_110--Hb_001775_100 Hb_005063_060 Hb_005063_060 Hb_001257_110--Hb_005063_060 Hb_074548_010 Hb_074548_010 Hb_001257_110--Hb_074548_010 Hb_002799_060 Hb_002799_060 Hb_001257_110--Hb_002799_060 Hb_005523_040 Hb_005523_040 Hb_001257_110--Hb_005523_040 Hb_011900_020--Hb_000359_070 Hb_006816_040 Hb_006816_040 Hb_011900_020--Hb_006816_040 Hb_011900_020--Hb_010080_070 Hb_002835_090 Hb_002835_090 Hb_011900_020--Hb_002835_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.636801 9.24284 28.9689 10.1722 0.930977 0.883861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.0604 3.28498 0.656007 1.83685 109.176

CAGE analysis