Hb_106552_030

Information

Type -
Description -
Location Contig106552: 8106-9493
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23180g
description POPTRDRAFT_717807; hypothetical protein
nr
ID XP_002308492.1
description hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HCB9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s23180g PE=4 SV=1
Gene Ontology
ID GO:0010027
description retinoic acid-induced 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02043: 4202-7496 , PASA_asmbl_02044: 4970-7496 , PASA_asmbl_02046: 8069-9307 , PASA_asmbl_02047: 8612-9254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106552_030 0.0 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
2 Hb_156850_020 0.0622294204 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
3 Hb_010080_070 0.0898572227 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
4 Hb_000992_090 0.0939181653 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
5 Hb_012940_020 0.0968441823 - - zeaxanthin epoxidase, putative [Ricinus communis]
6 Hb_068804_110 0.0990722856 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
7 Hb_000360_010 0.1036538984 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_028960_010 0.1053945782 - - phosphoglycerate kinase, putative [Ricinus communis]
9 Hb_011900_020 0.1128093157 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
10 Hb_002027_420 0.1155011501 - - hypothetical protein POPTR_0020s00240g [Populus trichocarpa]
11 Hb_000103_240 0.1165922877 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 [Jatropha curcas]
12 Hb_003905_030 0.1184102127 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
13 Hb_000009_470 0.1197764343 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
14 Hb_000359_070 0.1217617765 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
15 Hb_185274_010 0.1227190266 - - hypothetical protein ARALYDRAFT_330174 [Arabidopsis lyrata subsp. lyrata]
16 Hb_001135_170 0.1227290783 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
17 Hb_007595_020 0.1227570883 - - maturase K [Hevea brasiliensis]
18 Hb_000367_220 0.1229549618 - - hypothetical protein RCOM_1470580 [Ricinus communis]
19 Hb_001951_040 0.1246661687 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
20 Hb_007122_010 0.1253746111 - - hypothetical protein JCGZ_21227 [Jatropha curcas]

Gene co-expression network

sample Hb_106552_030 Hb_106552_030 Hb_156850_020 Hb_156850_020 Hb_106552_030--Hb_156850_020 Hb_010080_070 Hb_010080_070 Hb_106552_030--Hb_010080_070 Hb_000992_090 Hb_000992_090 Hb_106552_030--Hb_000992_090 Hb_012940_020 Hb_012940_020 Hb_106552_030--Hb_012940_020 Hb_068804_110 Hb_068804_110 Hb_106552_030--Hb_068804_110 Hb_000360_010 Hb_000360_010 Hb_106552_030--Hb_000360_010 Hb_156850_020--Hb_010080_070 Hb_028960_010 Hb_028960_010 Hb_156850_020--Hb_028960_010 Hb_156850_020--Hb_012940_020 Hb_011900_020 Hb_011900_020 Hb_156850_020--Hb_011900_020 Hb_000359_070 Hb_000359_070 Hb_156850_020--Hb_000359_070 Hb_001517_060 Hb_001517_060 Hb_010080_070--Hb_001517_060 Hb_000009_470 Hb_000009_470 Hb_010080_070--Hb_000009_470 Hb_010080_070--Hb_000992_090 Hb_000107_540 Hb_000107_540 Hb_010080_070--Hb_000107_540 Hb_023344_040 Hb_023344_040 Hb_000992_090--Hb_023344_040 Hb_001135_170 Hb_001135_170 Hb_000992_090--Hb_001135_170 Hb_011344_030 Hb_011344_030 Hb_000992_090--Hb_011344_030 Hb_000992_090--Hb_000009_470 Hb_000029_390 Hb_000029_390 Hb_000992_090--Hb_000029_390 Hb_000103_240 Hb_000103_240 Hb_000992_090--Hb_000103_240 Hb_012940_020--Hb_028960_010 Hb_012940_020--Hb_068804_110 Hb_003336_020 Hb_003336_020 Hb_012940_020--Hb_003336_020 Hb_012940_020--Hb_000359_070 Hb_007595_020 Hb_007595_020 Hb_068804_110--Hb_007595_020 Hb_068804_110--Hb_156850_020 Hb_001610_100 Hb_001610_100 Hb_068804_110--Hb_001610_100 Hb_001085_200 Hb_001085_200 Hb_068804_110--Hb_001085_200 Hb_068804_110--Hb_028960_010 Hb_000360_010--Hb_011900_020 Hb_000360_010--Hb_156850_020 Hb_003905_030 Hb_003905_030 Hb_000360_010--Hb_003905_030 Hb_000360_010--Hb_000359_070 Hb_000360_010--Hb_010080_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.269834 0.642794 4.08086 1.67201 0.176313 0.257589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.250929 0.164484 0.0611162 0.553745 21.8228

CAGE analysis