Hb_000359_070

Information

Type -
Description -
Location Contig359: 105787-109716
Sequence    

Annotation

kegg
ID rcu:RCOM_1192780
description Cell division protein ftsH, putative (EC:3.6.4.3)
nr
ID XP_012085012.1
description PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
swissprot
ID O80860
description ATP-dependent zinc metalloprotease FTSH 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1
trembl
ID A0A067K3X2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22199 PE=3 SV=1
Gene Ontology
ID GO:0016020
description atp-dependent zinc metalloprotease ftsh chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37035: 104793-109619
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_070 0.0 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
2 Hb_011900_020 0.0769323262 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
3 Hb_156850_020 0.0812588299 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
4 Hb_001266_160 0.0914818322 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
5 Hb_012940_020 0.097542563 - - zeaxanthin epoxidase, putative [Ricinus communis]
6 Hb_000038_020 0.0986134809 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
7 Hb_028960_010 0.1012771462 - - phosphoglycerate kinase, putative [Ricinus communis]
8 Hb_000360_010 0.1082884606 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_002835_090 0.1102327897 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
10 Hb_000359_160 0.1119455147 - - PREDICTED: protein CAJ1 [Jatropha curcas]
11 Hb_004979_050 0.1128491911 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
12 Hb_006816_040 0.1128650589 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]
13 Hb_000029_330 0.1132562833 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
14 Hb_000667_140 0.116274453 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
15 Hb_106552_030 0.1217617765 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
16 Hb_003336_020 0.1292868081 - - PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]
17 Hb_000069_370 0.1296850272 - - -
18 Hb_000966_040 0.1317974583 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
19 Hb_007595_050 0.1342824345 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
20 Hb_000107_540 0.1358281875 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]

Gene co-expression network

sample Hb_000359_070 Hb_000359_070 Hb_011900_020 Hb_011900_020 Hb_000359_070--Hb_011900_020 Hb_156850_020 Hb_156850_020 Hb_000359_070--Hb_156850_020 Hb_001266_160 Hb_001266_160 Hb_000359_070--Hb_001266_160 Hb_012940_020 Hb_012940_020 Hb_000359_070--Hb_012940_020 Hb_000038_020 Hb_000038_020 Hb_000359_070--Hb_000038_020 Hb_028960_010 Hb_028960_010 Hb_000359_070--Hb_028960_010 Hb_011900_020--Hb_156850_020 Hb_000360_010 Hb_000360_010 Hb_011900_020--Hb_000360_010 Hb_006816_040 Hb_006816_040 Hb_011900_020--Hb_006816_040 Hb_010080_070 Hb_010080_070 Hb_011900_020--Hb_010080_070 Hb_002835_090 Hb_002835_090 Hb_011900_020--Hb_002835_090 Hb_106552_030 Hb_106552_030 Hb_156850_020--Hb_106552_030 Hb_156850_020--Hb_010080_070 Hb_156850_020--Hb_028960_010 Hb_156850_020--Hb_012940_020 Hb_000029_330 Hb_000029_330 Hb_001266_160--Hb_000029_330 Hb_004979_050 Hb_004979_050 Hb_001266_160--Hb_004979_050 Hb_000317_180 Hb_000317_180 Hb_001266_160--Hb_000317_180 Hb_134949_010 Hb_134949_010 Hb_001266_160--Hb_134949_010 Hb_000359_160 Hb_000359_160 Hb_001266_160--Hb_000359_160 Hb_012940_020--Hb_028960_010 Hb_068804_110 Hb_068804_110 Hb_012940_020--Hb_068804_110 Hb_003336_020 Hb_003336_020 Hb_012940_020--Hb_003336_020 Hb_012940_020--Hb_106552_030 Hb_000667_140 Hb_000667_140 Hb_000038_020--Hb_000667_140 Hb_168031_020 Hb_168031_020 Hb_000038_020--Hb_168031_020 Hb_005332_150 Hb_005332_150 Hb_000038_020--Hb_005332_150 Hb_003427_080 Hb_003427_080 Hb_000038_020--Hb_003427_080 Hb_000069_370 Hb_000069_370 Hb_000038_020--Hb_000069_370 Hb_028960_010--Hb_068804_110 Hb_001691_180 Hb_001691_180 Hb_028960_010--Hb_001691_180 Hb_028960_010--Hb_106552_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.92796 12.8327 63.7456 42.5504 6.20007 8.28496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.93824 8.73625 8.62481 14.5637 326.229

CAGE analysis