Hb_000038_020

Information

Type -
Description -
Location Contig38: 15020-20375
Sequence    

Annotation

kegg
ID rcu:RCOM_1192780
description Cell division protein ftsH, putative (EC:3.6.4.3)
nr
ID XP_012085012.1
description PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
swissprot
ID O80860
description ATP-dependent zinc metalloprotease FTSH 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1
trembl
ID A0A067K3X2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22199 PE=3 SV=1
Gene Ontology
ID GO:0016020
description atp-dependent zinc metalloprotease ftsh chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38537: 14939-20434 , PASA_asmbl_38538: 15048-20434 , PASA_asmbl_38539: 15014-20434
cDNA
(Sanger)
(ID:Location)		 019_L13.ab1: 15048-16510

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000038_020 0.0 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
2 Hb_000667_140 0.0837753482 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
3 Hb_168031_020 0.0922621383 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
4 Hb_000359_070 0.0986134809 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
5 Hb_005332_150 0.0990985708 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
6 Hb_003427_080 0.1070857614 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
7 Hb_000069_370 0.1142826906 - - -
8 Hb_001266_160 0.1147555038 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
9 Hb_000966_040 0.1226326581 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
10 Hb_000890_110 0.1280092793 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
11 Hb_002835_090 0.1298717677 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
12 Hb_011900_020 0.1347505813 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
13 Hb_000699_080 0.1360359171 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
14 Hb_002686_060 0.1364209418 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000402_170 0.137149975 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
16 Hb_007002_010 0.1424897418 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
17 Hb_004712_200 0.1454714938 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
18 Hb_004109_130 0.1455178029 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
19 Hb_000975_050 0.1462986454 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
20 Hb_166127_030 0.1463249341 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000038_020 Hb_000038_020 Hb_000667_140 Hb_000667_140 Hb_000038_020--Hb_000667_140 Hb_168031_020 Hb_168031_020 Hb_000038_020--Hb_168031_020 Hb_000359_070 Hb_000359_070 Hb_000038_020--Hb_000359_070 Hb_005332_150 Hb_005332_150 Hb_000038_020--Hb_005332_150 Hb_003427_080 Hb_003427_080 Hb_000038_020--Hb_003427_080 Hb_000069_370 Hb_000069_370 Hb_000038_020--Hb_000069_370 Hb_002304_180 Hb_002304_180 Hb_000667_140--Hb_002304_180 Hb_000667_140--Hb_003427_080 Hb_003494_030 Hb_003494_030 Hb_000667_140--Hb_003494_030 Hb_001266_160 Hb_001266_160 Hb_000667_140--Hb_001266_160 Hb_000667_140--Hb_000359_070 Hb_168031_020--Hb_005332_150 Hb_001793_030 Hb_001793_030 Hb_168031_020--Hb_001793_030 Hb_000890_110 Hb_000890_110 Hb_168031_020--Hb_000890_110 Hb_168031_020--Hb_000359_070 Hb_078477_060 Hb_078477_060 Hb_168031_020--Hb_078477_060 Hb_011900_020 Hb_011900_020 Hb_000359_070--Hb_011900_020 Hb_156850_020 Hb_156850_020 Hb_000359_070--Hb_156850_020 Hb_000359_070--Hb_001266_160 Hb_012940_020 Hb_012940_020 Hb_000359_070--Hb_012940_020 Hb_028960_010 Hb_028960_010 Hb_000359_070--Hb_028960_010 Hb_004109_130 Hb_004109_130 Hb_005332_150--Hb_004109_130 Hb_000966_040 Hb_000966_040 Hb_005332_150--Hb_000966_040 Hb_005332_150--Hb_000069_370 Hb_166127_030 Hb_166127_030 Hb_005332_150--Hb_166127_030 Hb_000402_170 Hb_000402_170 Hb_003427_080--Hb_000402_170 Hb_000053_120 Hb_000053_120 Hb_003427_080--Hb_000053_120 Hb_003077_130 Hb_003077_130 Hb_003427_080--Hb_003077_130 Hb_003427_080--Hb_166127_030 Hb_000029_330 Hb_000029_330 Hb_000069_370--Hb_000029_330 Hb_000069_370--Hb_000667_140 Hb_002835_090 Hb_002835_090 Hb_000069_370--Hb_002835_090 Hb_000069_370--Hb_001266_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.7524 41.097 127.211 88.208 32.0508 31.7484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.601 24.2442 38.3377 45.9303 691.602

CAGE analysis