Hb_004109_130

Information

Type -
Description -
Location Contig4109: 105372-113808
Sequence    

Annotation

kegg
ID rcu:RCOM_0477800
description mitochondrial translational initiation factor, putative
nr
ID XP_012089508.1
description PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
swissprot
ID Q9SHI1
description Translation initiation factor IF-2, chloroplastic OS=Arabidopsis thaliana GN=At1g17220 PE=2 SV=2
trembl
ID A0A067JUM2
description Translation initiation factor IF-2 OS=Jatropha curcas GN=JCGZ_00191 PE=3 SV=1
Gene Ontology
ID GO:0009570
description translation initiation factor if- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40638: 105384-113772 , PASA_asmbl_40639: 106873-107049 , PASA_asmbl_40640: 107876-108115
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_130 0.0 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
2 Hb_005332_150 0.1087413492 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
3 Hb_000966_040 0.1089358212 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
4 Hb_020400_020 0.1178440869 - - starch synthase isoform II [Manihot esculenta]
5 Hb_065525_070 0.1332590818 - - unnamed protein product [Homo sapiens]
6 Hb_000084_140 0.1338994788 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
7 Hb_000208_270 0.1352089999 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
8 Hb_000359_160 0.1383680037 - - PREDICTED: protein CAJ1 [Jatropha curcas]
9 Hb_000574_330 0.1387691048 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
10 Hb_000538_300 0.1447115009 - - PREDICTED: WAT1-related protein At3g02690, chloroplastic [Jatropha curcas]
11 Hb_000038_020 0.1455178029 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
12 Hb_003687_160 0.1462029333 - - Ran GTPase binding protein, putative [Ricinus communis]
13 Hb_001250_020 0.1471428591 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
14 Hb_000975_050 0.1472407887 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
15 Hb_000069_370 0.1488821696 - - -
16 Hb_168031_020 0.1505326825 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
17 Hb_000574_320 0.1528160801 - - hypothetical protein CICLE_v10024937mg [Citrus clementina]
18 Hb_140389_010 0.1545318887 - - Ran GTPase binding protein, putative [Ricinus communis]
19 Hb_007982_040 0.1546724335 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
20 Hb_008616_040 0.1567459215 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004109_130 Hb_004109_130 Hb_005332_150 Hb_005332_150 Hb_004109_130--Hb_005332_150 Hb_000966_040 Hb_000966_040 Hb_004109_130--Hb_000966_040 Hb_020400_020 Hb_020400_020 Hb_004109_130--Hb_020400_020 Hb_065525_070 Hb_065525_070 Hb_004109_130--Hb_065525_070 Hb_000084_140 Hb_000084_140 Hb_004109_130--Hb_000084_140 Hb_000208_270 Hb_000208_270 Hb_004109_130--Hb_000208_270 Hb_000038_020 Hb_000038_020 Hb_005332_150--Hb_000038_020 Hb_005332_150--Hb_000966_040 Hb_168031_020 Hb_168031_020 Hb_005332_150--Hb_168031_020 Hb_000069_370 Hb_000069_370 Hb_005332_150--Hb_000069_370 Hb_166127_030 Hb_166127_030 Hb_005332_150--Hb_166127_030 Hb_000975_050 Hb_000975_050 Hb_000966_040--Hb_000975_050 Hb_004712_200 Hb_004712_200 Hb_000966_040--Hb_004712_200 Hb_000193_220 Hb_000193_220 Hb_000966_040--Hb_000193_220 Hb_010098_040 Hb_010098_040 Hb_000966_040--Hb_010098_040 Hb_000966_040--Hb_000208_270 Hb_000538_300 Hb_000538_300 Hb_020400_020--Hb_000538_300 Hb_020400_020--Hb_000084_140 Hb_020400_020--Hb_065525_070 Hb_001969_130 Hb_001969_130 Hb_020400_020--Hb_001969_130 Hb_001579_150 Hb_001579_150 Hb_020400_020--Hb_001579_150 Hb_001109_160 Hb_001109_160 Hb_065525_070--Hb_001109_160 Hb_000976_130 Hb_000976_130 Hb_065525_070--Hb_000976_130 Hb_003029_140 Hb_003029_140 Hb_065525_070--Hb_003029_140 Hb_008616_040 Hb_008616_040 Hb_065525_070--Hb_008616_040 Hb_001250_020 Hb_001250_020 Hb_065525_070--Hb_001250_020 Hb_007933_030 Hb_007933_030 Hb_000084_140--Hb_007933_030 Hb_000084_140--Hb_065525_070 Hb_000084_140--Hb_000538_300 Hb_000084_140--Hb_000976_130 Hb_020141_030 Hb_020141_030 Hb_000208_270--Hb_020141_030 Hb_000208_270--Hb_010098_040 Hb_000787_210 Hb_000787_210 Hb_000208_270--Hb_000787_210 Hb_000208_270--Hb_000538_300 Hb_002814_010 Hb_002814_010 Hb_000208_270--Hb_002814_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.52127 29.5987 30.2145 23.2261 4.79686 7.52794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.34526 3.33554 6.70183 11.4868 132.227

CAGE analysis