Hb_001579_150

Information

Type -
Description -
Location Contig1579: 110776-113941
Sequence    

Annotation

kegg
ID rcu:RCOM_0528100
description ATP binding protein, putative (EC:2.7.11.30)
nr
ID XP_002525373.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9ZUE0
description Proline-rich receptor-like protein kinase PERK12 OS=Arabidopsis thaliana GN=PERK12 PE=2 SV=2
trembl
ID B9SHA4
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0528100 PE=3 SV=1
Gene Ontology
ID GO:0005886
description proline-rich receptor-like protein kinase perk12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13822: 110477-110811
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_150 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_020400_020 0.1274857823 - - starch synthase isoform II [Manihot esculenta]
3 Hb_002010_110 0.1458688755 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
4 Hb_000230_450 0.1599699853 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003582_090 0.1649110314 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
6 Hb_002026_030 0.167868262 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
7 Hb_001221_400 0.1685690591 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
8 Hb_000056_110 0.169535536 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
9 Hb_000084_140 0.1780026902 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
10 Hb_001053_020 0.1781470595 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
11 Hb_003006_090 0.1796951306 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
12 Hb_000787_210 0.1846368971 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002559_030 0.1854209651 - - oxidoreductase, putative [Ricinus communis]
14 Hb_000117_030 0.1881491002 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
15 Hb_007933_030 0.188336712 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
16 Hb_001486_100 0.1884880108 - - tubulin alpha chain, putative [Ricinus communis]
17 Hb_001916_150 0.1891344441 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Vitis vinifera]
18 Hb_001677_040 0.1896662855 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
19 Hb_001969_130 0.1898063999 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
20 Hb_012799_190 0.190393106 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]

Gene co-expression network

sample Hb_001579_150 Hb_001579_150 Hb_020400_020 Hb_020400_020 Hb_001579_150--Hb_020400_020 Hb_002010_110 Hb_002010_110 Hb_001579_150--Hb_002010_110 Hb_000230_450 Hb_000230_450 Hb_001579_150--Hb_000230_450 Hb_003582_090 Hb_003582_090 Hb_001579_150--Hb_003582_090 Hb_002026_030 Hb_002026_030 Hb_001579_150--Hb_002026_030 Hb_001221_400 Hb_001221_400 Hb_001579_150--Hb_001221_400 Hb_000538_300 Hb_000538_300 Hb_020400_020--Hb_000538_300 Hb_000084_140 Hb_000084_140 Hb_020400_020--Hb_000084_140 Hb_004109_130 Hb_004109_130 Hb_020400_020--Hb_004109_130 Hb_065525_070 Hb_065525_070 Hb_020400_020--Hb_065525_070 Hb_001969_130 Hb_001969_130 Hb_020400_020--Hb_001969_130 Hb_002010_110--Hb_001221_400 Hb_003494_130 Hb_003494_130 Hb_002010_110--Hb_003494_130 Hb_002010_110--Hb_020400_020 Hb_012799_190 Hb_012799_190 Hb_002010_110--Hb_012799_190 Hb_000762_110 Hb_000762_110 Hb_002010_110--Hb_000762_110 Hb_001486_100 Hb_001486_100 Hb_000230_450--Hb_001486_100 Hb_000429_160 Hb_000429_160 Hb_000230_450--Hb_000429_160 Hb_031862_120 Hb_031862_120 Hb_000230_450--Hb_031862_120 Hb_143871_010 Hb_143871_010 Hb_000230_450--Hb_143871_010 Hb_000326_080 Hb_000326_080 Hb_000230_450--Hb_000326_080 Hb_000363_250 Hb_000363_250 Hb_000230_450--Hb_000363_250 Hb_000445_370 Hb_000445_370 Hb_003582_090--Hb_000445_370 Hb_002675_080 Hb_002675_080 Hb_003582_090--Hb_002675_080 Hb_001195_660 Hb_001195_660 Hb_003582_090--Hb_001195_660 Hb_000042_050 Hb_000042_050 Hb_003582_090--Hb_000042_050 Hb_001053_020 Hb_001053_020 Hb_003582_090--Hb_001053_020 Hb_003847_040 Hb_003847_040 Hb_003582_090--Hb_003847_040 Hb_000665_200 Hb_000665_200 Hb_002026_030--Hb_000665_200 Hb_002026_030--Hb_001969_130 Hb_001124_140 Hb_001124_140 Hb_002026_030--Hb_001124_140 Hb_004052_110 Hb_004052_110 Hb_002026_030--Hb_004052_110 Hb_002026_030--Hb_002675_080 Hb_004678_010 Hb_004678_010 Hb_002026_030--Hb_004678_010 Hb_000140_060 Hb_000140_060 Hb_001221_400--Hb_000140_060 Hb_002811_050 Hb_002811_050 Hb_001221_400--Hb_002811_050 Hb_001221_400--Hb_012799_190 Hb_000056_110 Hb_000056_110 Hb_001221_400--Hb_000056_110 Hb_003006_090 Hb_003006_090 Hb_001221_400--Hb_003006_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00929497 0.138089 0.0991124 0.205415 0.0273153 0.0177597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0422321 0 0.0315568 0.0330328 0.351738

CAGE analysis