Hb_000230_450

Information

Type -
Description -
Location Contig230: 406562-409254
Sequence    

Annotation

kegg
ID rcu:RCOM_0678230
description hypothetical protein
nr
ID XP_002516799.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RST0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0678230 PE=4 SV=1
Gene Ontology
ID GO:0005515
description arm repeat superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24053: 406702-407283
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_450 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001486_100 0.1424602346 - - tubulin alpha chain, putative [Ricinus communis]
3 Hb_000429_160 0.1456206058 - - PREDICTED: uncharacterized protein LOC105645177 [Jatropha curcas]
4 Hb_031862_120 0.1461172394 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
5 Hb_143871_010 0.1527541685 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
6 Hb_000326_080 0.1547562599 - - lrr receptor protein kinase, putative [Ricinus communis]
7 Hb_000363_250 0.1578169282 - - PREDICTED: pirin-like protein [Malus domestica]
8 Hb_002838_010 0.1586325698 - - AGPase large subunit protein [Hevea brasiliensis]
9 Hb_001579_150 0.1599699853 - - ATP binding protein, putative [Ricinus communis]
10 Hb_000659_040 0.1615869841 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
11 Hb_003097_220 0.166575357 - - hypothetical protein POPTR_0001s06150g [Populus trichocarpa]
12 Hb_000753_150 0.1668980801 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
13 Hb_002740_100 0.1676449138 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
14 Hb_001677_040 0.1676719819 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
15 Hb_000272_030 0.1685702245 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
16 Hb_000941_090 0.1714910088 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
17 Hb_005725_160 0.171964996 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
18 Hb_005408_100 0.1734494762 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
19 Hb_000069_690 0.1744577772 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF6 [Jatropha curcas]
20 Hb_000103_410 0.1747348508 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]

Gene co-expression network

sample Hb_000230_450 Hb_000230_450 Hb_001486_100 Hb_001486_100 Hb_000230_450--Hb_001486_100 Hb_000429_160 Hb_000429_160 Hb_000230_450--Hb_000429_160 Hb_031862_120 Hb_031862_120 Hb_000230_450--Hb_031862_120 Hb_143871_010 Hb_143871_010 Hb_000230_450--Hb_143871_010 Hb_000326_080 Hb_000326_080 Hb_000230_450--Hb_000326_080 Hb_000363_250 Hb_000363_250 Hb_000230_450--Hb_000363_250 Hb_006414_010 Hb_006414_010 Hb_001486_100--Hb_006414_010 Hb_002740_100 Hb_002740_100 Hb_001486_100--Hb_002740_100 Hb_001486_100--Hb_000326_080 Hb_002838_010 Hb_002838_010 Hb_001486_100--Hb_002838_010 Hb_000917_210 Hb_000917_210 Hb_001486_100--Hb_000917_210 Hb_003177_090 Hb_003177_090 Hb_001486_100--Hb_003177_090 Hb_001318_100 Hb_001318_100 Hb_000429_160--Hb_001318_100 Hb_003125_210 Hb_003125_210 Hb_000429_160--Hb_003125_210 Hb_000429_160--Hb_031862_120 Hb_028227_040 Hb_028227_040 Hb_000429_160--Hb_028227_040 Hb_003147_040 Hb_003147_040 Hb_000429_160--Hb_003147_040 Hb_000659_040 Hb_000659_040 Hb_000429_160--Hb_000659_040 Hb_031862_120--Hb_143871_010 Hb_000941_090 Hb_000941_090 Hb_031862_120--Hb_000941_090 Hb_005051_010 Hb_005051_010 Hb_031862_120--Hb_005051_010 Hb_000753_150 Hb_000753_150 Hb_031862_120--Hb_000753_150 Hb_000427_040 Hb_000427_040 Hb_031862_120--Hb_000427_040 Hb_000272_030 Hb_000272_030 Hb_031862_120--Hb_000272_030 Hb_143871_010--Hb_000753_150 Hb_000834_100 Hb_000834_100 Hb_143871_010--Hb_000834_100 Hb_143871_010--Hb_000427_040 Hb_143871_010--Hb_005051_010 Hb_143871_010--Hb_000326_080 Hb_000252_260 Hb_000252_260 Hb_000326_080--Hb_000252_260 Hb_000326_080--Hb_031862_120 Hb_001951_230 Hb_001951_230 Hb_000326_080--Hb_001951_230 Hb_000326_080--Hb_002740_100 Hb_000363_250--Hb_000659_040 Hb_000215_290 Hb_000215_290 Hb_000363_250--Hb_000215_290 Hb_144703_010 Hb_144703_010 Hb_000363_250--Hb_144703_010 Hb_005271_180 Hb_005271_180 Hb_000363_250--Hb_005271_180 Hb_000363_250--Hb_001951_230 Hb_000613_250 Hb_000613_250 Hb_000363_250--Hb_000613_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.612882 0.494957 0.946095 0.132712 0.0275283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0350779 0 0.0526278 0.191808 1.11494

CAGE analysis