Hb_002740_100

Information

Type -
Description -
Location Contig2740: 174745-176125
Sequence    

Annotation

kegg
ID rcu:RCOM_1437110
description Rhicadhesin receptor precursor, putative (EC:1.15.1.1)
nr
ID XP_002512594.1
description Rhicadhesin receptor precursor, putative [Ricinus communis]
swissprot
ID Q6I544
description Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1
trembl
ID B9RFS5
description Rhicadhesin receptor, putative OS=Ricinus communis GN=RCOM_1437110 PE=4 SV=1
Gene Ontology
ID GO:0030145
description germin-like protein 5-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28672: 174460-174738 , PASA_asmbl_28673: 175071-176110
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002740_100 0.0 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
2 Hb_005724_040 0.0883312588 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
3 Hb_001486_100 0.0924543898 - - tubulin alpha chain, putative [Ricinus communis]
4 Hb_000181_230 0.1063231899 - - copper ion binding protein, putative [Ricinus communis]
5 Hb_006414_010 0.1073655836 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
6 Hb_005408_100 0.1099109034 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
7 Hb_000326_080 0.1171012098 - - lrr receptor protein kinase, putative [Ricinus communis]
8 Hb_000107_550 0.1171267609 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
9 Hb_002685_160 0.1181406665 - - leucine-rich repeat protein, putative [Ricinus communis]
10 Hb_002099_060 0.1187041373 - - Protein AFR, putative [Ricinus communis]
11 Hb_002685_220 0.1210526866 - - PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]
12 Hb_000635_050 0.1242345591 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
13 Hb_003001_130 0.1265405219 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001318_100 0.1284736833 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
15 Hb_002097_080 0.1285226417 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]
16 Hb_003912_080 0.1332640918 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
17 Hb_029748_020 0.1333991293 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_001221_390 0.134230703 - - Phospholipase C 4 precursor, putative [Ricinus communis]
19 Hb_000613_250 0.134387612 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
20 Hb_010050_020 0.1344555612 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]

Gene co-expression network

sample Hb_002740_100 Hb_002740_100 Hb_005724_040 Hb_005724_040 Hb_002740_100--Hb_005724_040 Hb_001486_100 Hb_001486_100 Hb_002740_100--Hb_001486_100 Hb_000181_230 Hb_000181_230 Hb_002740_100--Hb_000181_230 Hb_006414_010 Hb_006414_010 Hb_002740_100--Hb_006414_010 Hb_005408_100 Hb_005408_100 Hb_002740_100--Hb_005408_100 Hb_000326_080 Hb_000326_080 Hb_002740_100--Hb_000326_080 Hb_005724_040--Hb_000181_230 Hb_001221_390 Hb_001221_390 Hb_005724_040--Hb_001221_390 Hb_007483_120 Hb_007483_120 Hb_005724_040--Hb_007483_120 Hb_002099_060 Hb_002099_060 Hb_005724_040--Hb_002099_060 Hb_002685_160 Hb_002685_160 Hb_005724_040--Hb_002685_160 Hb_001486_100--Hb_006414_010 Hb_001486_100--Hb_000326_080 Hb_002838_010 Hb_002838_010 Hb_001486_100--Hb_002838_010 Hb_000917_210 Hb_000917_210 Hb_001486_100--Hb_000917_210 Hb_003177_090 Hb_003177_090 Hb_001486_100--Hb_003177_090 Hb_000181_230--Hb_007483_120 Hb_000181_230--Hb_002099_060 Hb_002344_080 Hb_002344_080 Hb_000181_230--Hb_002344_080 Hb_000181_230--Hb_002685_160 Hb_007894_070 Hb_007894_070 Hb_006414_010--Hb_007894_070 Hb_000800_010 Hb_000800_010 Hb_006414_010--Hb_000800_010 Hb_000210_040 Hb_000210_040 Hb_006414_010--Hb_000210_040 Hb_000659_040 Hb_000659_040 Hb_006414_010--Hb_000659_040 Hb_000230_470 Hb_000230_470 Hb_005408_100--Hb_000230_470 Hb_000109_190 Hb_000109_190 Hb_005408_100--Hb_000109_190 Hb_002909_100 Hb_002909_100 Hb_005408_100--Hb_002909_100 Hb_000320_270 Hb_000320_270 Hb_005408_100--Hb_000320_270 Hb_000753_120 Hb_000753_120 Hb_005408_100--Hb_000753_120 Hb_000252_260 Hb_000252_260 Hb_000326_080--Hb_000252_260 Hb_031862_120 Hb_031862_120 Hb_000326_080--Hb_031862_120 Hb_001951_230 Hb_001951_230 Hb_000326_080--Hb_001951_230 Hb_143871_010 Hb_143871_010 Hb_000326_080--Hb_143871_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.11817 51.1036 45.6988 83.7208 5.04866 5.54859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.32101 2.13201 2.74412 34.3112 68.5488

CAGE analysis