Hb_005724_040

Information

Type -
Description -
Location Contig5724: 80937-85586
Sequence    

Annotation

kegg
ID pop:POPTR_0030s00450g
description hypothetical protein
nr
ID KDP32592.1
description hypothetical protein JCGZ_13142 [Jatropha curcas]
swissprot
ID P43298
description Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1
trembl
ID A0A067K8Y9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13142 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor protein kinase tmk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49394: 80972-85363 , PASA_asmbl_49395: 81390-85363
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005724_040 0.0 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
2 Hb_000181_230 0.0873595282 - - copper ion binding protein, putative [Ricinus communis]
3 Hb_002740_100 0.0883312588 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
4 Hb_001221_390 0.0970087309 - - Phospholipase C 4 precursor, putative [Ricinus communis]
5 Hb_007483_120 0.1018295238 - - 60S ribosomal protein L32A [Hevea brasiliensis]
6 Hb_002099_060 0.105763496 - - Protein AFR, putative [Ricinus communis]
7 Hb_002685_160 0.1145275027 - - leucine-rich repeat protein, putative [Ricinus communis]
8 Hb_000230_360 0.1151500023 - - PREDICTED: BI1-like protein [Jatropha curcas]
9 Hb_000061_310 0.1202455424 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
10 Hb_029748_020 0.1260919142 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_012308_050 0.1265562197 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
12 Hb_000635_050 0.1289007908 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
13 Hb_002849_180 0.1304739705 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
14 Hb_000438_020 0.1307585548 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
15 Hb_003912_080 0.131038382 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
16 Hb_010050_020 0.1313544799 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
17 Hb_000085_380 0.1348856276 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004330_020 0.1400169868 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
19 Hb_005408_100 0.1415798201 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
20 Hb_002539_050 0.1421212399 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]

Gene co-expression network

sample Hb_005724_040 Hb_005724_040 Hb_000181_230 Hb_000181_230 Hb_005724_040--Hb_000181_230 Hb_002740_100 Hb_002740_100 Hb_005724_040--Hb_002740_100 Hb_001221_390 Hb_001221_390 Hb_005724_040--Hb_001221_390 Hb_007483_120 Hb_007483_120 Hb_005724_040--Hb_007483_120 Hb_002099_060 Hb_002099_060 Hb_005724_040--Hb_002099_060 Hb_002685_160 Hb_002685_160 Hb_005724_040--Hb_002685_160 Hb_000181_230--Hb_007483_120 Hb_000181_230--Hb_002740_100 Hb_000181_230--Hb_002099_060 Hb_002344_080 Hb_002344_080 Hb_000181_230--Hb_002344_080 Hb_000181_230--Hb_002685_160 Hb_001486_100 Hb_001486_100 Hb_002740_100--Hb_001486_100 Hb_006414_010 Hb_006414_010 Hb_002740_100--Hb_006414_010 Hb_005408_100 Hb_005408_100 Hb_002740_100--Hb_005408_100 Hb_000326_080 Hb_000326_080 Hb_002740_100--Hb_000326_080 Hb_010050_020 Hb_010050_020 Hb_001221_390--Hb_010050_020 Hb_000318_170 Hb_000318_170 Hb_001221_390--Hb_000318_170 Hb_000085_380 Hb_000085_380 Hb_001221_390--Hb_000085_380 Hb_000791_050 Hb_000791_050 Hb_001221_390--Hb_000791_050 Hb_012760_090 Hb_012760_090 Hb_001221_390--Hb_012760_090 Hb_012308_050 Hb_012308_050 Hb_007483_120--Hb_012308_050 Hb_002510_100 Hb_002510_100 Hb_007483_120--Hb_002510_100 Hb_007483_120--Hb_002685_160 Hb_000685_020 Hb_000685_020 Hb_007483_120--Hb_000685_020 Hb_000438_020 Hb_000438_020 Hb_002099_060--Hb_000438_020 Hb_029748_020 Hb_029748_020 Hb_002099_060--Hb_029748_020 Hb_004864_020 Hb_004864_020 Hb_002099_060--Hb_004864_020 Hb_000418_150 Hb_000418_150 Hb_002099_060--Hb_000418_150 Hb_002685_160--Hb_000685_020 Hb_000230_360 Hb_000230_360 Hb_002685_160--Hb_000230_360 Hb_152980_020 Hb_152980_020 Hb_002685_160--Hb_152980_020 Hb_003656_090 Hb_003656_090 Hb_002685_160--Hb_003656_090 Hb_002097_080 Hb_002097_080 Hb_002685_160--Hb_002097_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.25367 8.47084 10.335 14.2899 1.5819 1.62566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.322936 0.193141 0.175312 6.69686 10.7127

CAGE analysis