Hb_001221_390

Information

Type -
Description -
Location Contig1221: 261406-263791
Sequence    

Annotation

kegg
ID rcu:RCOM_1505800
description Phospholipase C 4 precursor, putative (EC:3.1.4.3)
nr
ID XP_002511167.1
description Phospholipase C 4 precursor, putative [Ricinus communis]
swissprot
ID Q8H965
description Non-specific phospholipase C6 OS=Arabidopsis thaliana GN=NPC6 PE=2 SV=1
trembl
ID B9RAE2
description Phospholipase C 4, putative OS=Ricinus communis GN=RCOM_1505800 PE=4 SV=1
Gene Ontology
ID GO:0034480
description non-specific phospholipase c6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06747: 261437-263282 , PASA_asmbl_06748: 263313-263544
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_390 0.0 - - Phospholipase C 4 precursor, putative [Ricinus communis]
2 Hb_010050_020 0.0901726457 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
3 Hb_005724_040 0.0970087309 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
4 Hb_000318_170 0.1069319104 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
5 Hb_000085_380 0.1111880722 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000791_050 0.1115016222 - - PREDICTED: uncharacterized protein LOC105636760 [Jatropha curcas]
7 Hb_012760_090 0.1116278283 - - Aspartic proteinase-like protein 1 [Morus notabilis]
8 Hb_000309_030 0.1124162065 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
9 Hb_000012_400 0.1171634765 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
10 Hb_003849_120 0.1182347485 - - PREDICTED: uncharacterized protein LOC100264440 [Vitis vinifera]
11 Hb_001195_420 0.1187098184 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
12 Hb_000116_240 0.1204694432 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
13 Hb_005485_070 0.1242705941 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
14 Hb_002641_160 0.1245432841 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001439_210 0.1258762293 - - EXS family protein [Populus trichocarpa]
16 Hb_006949_060 0.1283544273 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
17 Hb_000061_310 0.1289327876 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
18 Hb_034507_060 0.1303881633 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
19 Hb_002539_050 0.1310939115 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
20 Hb_000363_180 0.1312940015 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]

Gene co-expression network

sample Hb_001221_390 Hb_001221_390 Hb_010050_020 Hb_010050_020 Hb_001221_390--Hb_010050_020 Hb_005724_040 Hb_005724_040 Hb_001221_390--Hb_005724_040 Hb_000318_170 Hb_000318_170 Hb_001221_390--Hb_000318_170 Hb_000085_380 Hb_000085_380 Hb_001221_390--Hb_000085_380 Hb_000791_050 Hb_000791_050 Hb_001221_390--Hb_000791_050 Hb_012760_090 Hb_012760_090 Hb_001221_390--Hb_012760_090 Hb_010050_020--Hb_012760_090 Hb_000622_330 Hb_000622_330 Hb_010050_020--Hb_000622_330 Hb_002641_160 Hb_002641_160 Hb_010050_020--Hb_002641_160 Hb_004522_030 Hb_004522_030 Hb_010050_020--Hb_004522_030 Hb_000012_400 Hb_000012_400 Hb_010050_020--Hb_000012_400 Hb_000181_230 Hb_000181_230 Hb_005724_040--Hb_000181_230 Hb_002740_100 Hb_002740_100 Hb_005724_040--Hb_002740_100 Hb_007483_120 Hb_007483_120 Hb_005724_040--Hb_007483_120 Hb_002099_060 Hb_002099_060 Hb_005724_040--Hb_002099_060 Hb_002685_160 Hb_002685_160 Hb_005724_040--Hb_002685_160 Hb_005485_070 Hb_005485_070 Hb_000318_170--Hb_005485_070 Hb_000318_170--Hb_000791_050 Hb_000309_030 Hb_000309_030 Hb_000318_170--Hb_000309_030 Hb_000116_240 Hb_000116_240 Hb_000318_170--Hb_000116_240 Hb_000731_210 Hb_000731_210 Hb_000318_170--Hb_000731_210 Hb_007575_030 Hb_007575_030 Hb_000318_170--Hb_007575_030 Hb_002833_020 Hb_002833_020 Hb_000085_380--Hb_002833_020 Hb_000085_380--Hb_000318_170 Hb_001008_110 Hb_001008_110 Hb_000085_380--Hb_001008_110 Hb_033234_010 Hb_033234_010 Hb_000085_380--Hb_033234_010 Hb_003106_110 Hb_003106_110 Hb_000085_380--Hb_003106_110 Hb_027380_150 Hb_027380_150 Hb_000791_050--Hb_027380_150 Hb_000737_010 Hb_000737_010 Hb_000791_050--Hb_000737_010 Hb_000791_050--Hb_010050_020 Hb_000438_010 Hb_000438_010 Hb_000791_050--Hb_000438_010 Hb_012760_090--Hb_002641_160 Hb_005333_080 Hb_005333_080 Hb_012760_090--Hb_005333_080 Hb_034507_060 Hb_034507_060 Hb_012760_090--Hb_034507_060 Hb_004218_130 Hb_004218_130 Hb_012760_090--Hb_004218_130 Hb_012760_090--Hb_000318_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.32998 8.67253 11.8672 15.8584 2.28552 1.03811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.817165 0.445143 0.595054 9.40662 9.14613

CAGE analysis