Hb_033234_010

Information

Type desease resistance
Description Gene Name: LRR_8
Location Contig33234: 93-5948
Sequence    

Annotation

kegg
ID tcc:TCM_042677
description Disease resistance protein RPP8
nr
ID XP_007009190.1
description Disease resistance protein RPP8 [Theobroma cacao]
swissprot
ID Q9SX38
description Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=3 SV=2
trembl
ID A0A061FKZ8
description Disease resistance protein RPP8 OS=Theobroma cacao GN=TCM_042677 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rpp8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033234_010 0.0 desease resistance Gene Name: LRR_8 Disease resistance protein RPP8 [Theobroma cacao]
2 Hb_042202_020 0.0894138748 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
3 Hb_002833_020 0.1140530956 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
4 Hb_000085_380 0.1148108733 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000072_020 0.1180549483 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
6 Hb_132840_030 0.1187621723 transcription factor TF Family: MYB-related lhy1 [Populus tremula]
7 Hb_000120_310 0.1193016215 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
8 Hb_000100_210 0.1237287064 - - PREDICTED: selenium-binding protein 1-like [Jatropha curcas]
9 Hb_025432_010 0.1256970732 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
10 Hb_001008_110 0.1328529556 - - -
11 Hb_000056_280 0.1338313769 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
12 Hb_000220_080 0.1362090949 - - kinase, putative [Ricinus communis]
13 Hb_000997_340 0.1363570237 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
14 Hb_003142_060 0.136919387 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000094_250 0.1373540392 - - PREDICTED: uncharacterized protein LOC105633774 isoform X3 [Jatropha curcas]
16 Hb_000417_280 0.1375054301 - - conserved hypothetical protein [Ricinus communis]
17 Hb_033363_010 0.138403598 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
18 Hb_073808_010 0.1390026929 desease resistance Gene Name: DUF594 ATP binding protein, putative [Ricinus communis]
19 Hb_000254_010 0.1403921304 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Jatropha curcas]
20 Hb_001832_210 0.1419540833 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_033234_010 Hb_033234_010 Hb_042202_020 Hb_042202_020 Hb_033234_010--Hb_042202_020 Hb_002833_020 Hb_002833_020 Hb_033234_010--Hb_002833_020 Hb_000085_380 Hb_000085_380 Hb_033234_010--Hb_000085_380 Hb_000072_020 Hb_000072_020 Hb_033234_010--Hb_000072_020 Hb_132840_030 Hb_132840_030 Hb_033234_010--Hb_132840_030 Hb_000120_310 Hb_000120_310 Hb_033234_010--Hb_000120_310 Hb_001268_300 Hb_001268_300 Hb_042202_020--Hb_001268_300 Hb_001008_110 Hb_001008_110 Hb_042202_020--Hb_001008_110 Hb_042202_020--Hb_002833_020 Hb_000527_140 Hb_000527_140 Hb_042202_020--Hb_000527_140 Hb_003142_060 Hb_003142_060 Hb_042202_020--Hb_003142_060 Hb_002833_020--Hb_001008_110 Hb_000417_280 Hb_000417_280 Hb_002833_020--Hb_000417_280 Hb_000100_210 Hb_000100_210 Hb_002833_020--Hb_000100_210 Hb_002833_020--Hb_000085_380 Hb_002833_020--Hb_000120_310 Hb_000318_170 Hb_000318_170 Hb_000085_380--Hb_000318_170 Hb_001221_390 Hb_001221_390 Hb_000085_380--Hb_001221_390 Hb_000085_380--Hb_001008_110 Hb_003106_110 Hb_003106_110 Hb_000085_380--Hb_003106_110 Hb_033363_010 Hb_033363_010 Hb_000072_020--Hb_033363_010 Hb_000227_320 Hb_000227_320 Hb_000072_020--Hb_000227_320 Hb_003964_110 Hb_003964_110 Hb_000072_020--Hb_003964_110 Hb_002235_310 Hb_002235_310 Hb_000072_020--Hb_002235_310 Hb_000805_190 Hb_000805_190 Hb_000072_020--Hb_000805_190 Hb_000133_090 Hb_000133_090 Hb_000072_020--Hb_000133_090 Hb_005588_120 Hb_005588_120 Hb_132840_030--Hb_005588_120 Hb_006949_060 Hb_006949_060 Hb_132840_030--Hb_006949_060 Hb_001514_240 Hb_001514_240 Hb_132840_030--Hb_001514_240 Hb_026698_020 Hb_026698_020 Hb_132840_030--Hb_026698_020 Hb_132840_030--Hb_000227_320 Hb_001404_090 Hb_001404_090 Hb_132840_030--Hb_001404_090 Hb_001856_170 Hb_001856_170 Hb_000120_310--Hb_001856_170 Hb_001369_160 Hb_001369_160 Hb_000120_310--Hb_001369_160 Hb_001488_280 Hb_001488_280 Hb_000120_310--Hb_001488_280 Hb_001596_020 Hb_001596_020 Hb_000120_310--Hb_001596_020 Hb_004586_240 Hb_004586_240 Hb_000120_310--Hb_004586_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.216778 3.35709 1.92238 3.00814 0.389856 0.275661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0738921 0.18414 0.408836 2.99962 1.78294

CAGE analysis