Hb_000100_210

Information

Type -
Description -
Location Contig100: 440039-444016
Sequence    

Annotation

kegg
ID rcu:RCOM_1552910
description selenium-binding protein, putative
nr
ID XP_012078460.1
description PREDICTED: selenium-binding protein 1-like [Jatropha curcas]
swissprot
ID Q93WN0
description Selenium-binding protein 2 OS=Arabidopsis thaliana GN=SBP2 PE=1 SV=1
trembl
ID A0A067K8P0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13151 PE=4 SV=1
Gene Ontology
ID GO:0004721
description selenium-binding protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00210: 440094-444341 , PASA_asmbl_00211: 440583-443997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000100_210 0.0 - - PREDICTED: selenium-binding protein 1-like [Jatropha curcas]
2 Hb_001522_040 0.0879644289 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
3 Hb_029748_020 0.0971551398 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_002833_020 0.1036461397 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
5 Hb_000997_340 0.1043946089 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
6 Hb_023386_050 0.1106244732 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002686_210 0.1143581056 - - zinc finger protein, putative [Ricinus communis]
8 Hb_000438_020 0.1231591141 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
9 Hb_033234_010 0.1237287064 desease resistance Gene Name: LRR_8 Disease resistance protein RPP8 [Theobroma cacao]
10 Hb_000732_230 0.1249474721 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
11 Hb_000197_230 0.1269247446 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
12 Hb_052117_010 0.1278214806 - - kinase, putative [Ricinus communis]
13 Hb_005539_100 0.1281711508 - - nucleoside transporter, putative [Ricinus communis]
14 Hb_061908_020 0.1310526457 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
15 Hb_172676_010 0.131857559 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
16 Hb_115513_040 0.1336878976 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000085_380 0.1380815932 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001832_210 0.1384155004 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
19 Hb_000069_430 0.1384413842 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
20 Hb_001951_240 0.1405029051 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000100_210 Hb_000100_210 Hb_001522_040 Hb_001522_040 Hb_000100_210--Hb_001522_040 Hb_029748_020 Hb_029748_020 Hb_000100_210--Hb_029748_020 Hb_002833_020 Hb_002833_020 Hb_000100_210--Hb_002833_020 Hb_000997_340 Hb_000997_340 Hb_000100_210--Hb_000997_340 Hb_023386_050 Hb_023386_050 Hb_000100_210--Hb_023386_050 Hb_002686_210 Hb_002686_210 Hb_000100_210--Hb_002686_210 Hb_052117_010 Hb_052117_010 Hb_001522_040--Hb_052117_010 Hb_009745_010 Hb_009745_010 Hb_001522_040--Hb_009745_010 Hb_001898_020 Hb_001898_020 Hb_001522_040--Hb_001898_020 Hb_001522_040--Hb_029748_020 Hb_002685_030 Hb_002685_030 Hb_001522_040--Hb_002685_030 Hb_000321_120 Hb_000321_120 Hb_029748_020--Hb_000321_120 Hb_002099_060 Hb_002099_060 Hb_029748_020--Hb_002099_060 Hb_000438_020 Hb_000438_020 Hb_029748_020--Hb_000438_020 Hb_155150_010 Hb_155150_010 Hb_029748_020--Hb_155150_010 Hb_001008_110 Hb_001008_110 Hb_002833_020--Hb_001008_110 Hb_000417_280 Hb_000417_280 Hb_002833_020--Hb_000417_280 Hb_000085_380 Hb_000085_380 Hb_002833_020--Hb_000085_380 Hb_000120_310 Hb_000120_310 Hb_002833_020--Hb_000120_310 Hb_042202_020 Hb_042202_020 Hb_002833_020--Hb_042202_020 Hb_000997_340--Hb_052117_010 Hb_000997_340--Hb_001522_040 Hb_000997_340--Hb_001898_020 Hb_001832_210 Hb_001832_210 Hb_000997_340--Hb_001832_210 Hb_000950_040 Hb_000950_040 Hb_000997_340--Hb_000950_040 Hb_001123_170 Hb_001123_170 Hb_023386_050--Hb_001123_170 Hb_002375_060 Hb_002375_060 Hb_023386_050--Hb_002375_060 Hb_003656_170 Hb_003656_170 Hb_023386_050--Hb_003656_170 Hb_002324_050 Hb_002324_050 Hb_023386_050--Hb_002324_050 Hb_005000_050 Hb_005000_050 Hb_023386_050--Hb_005000_050 Hb_000230_470 Hb_000230_470 Hb_002686_210--Hb_000230_470 Hb_005408_100 Hb_005408_100 Hb_002686_210--Hb_005408_100 Hb_002686_210--Hb_001522_040 Hb_002686_210--Hb_029748_020 Hb_000196_010 Hb_000196_010 Hb_002686_210--Hb_000196_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.52836 119.835 63.0726 87.7121 13.5107 16.9515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.01892 0.888809 3.43722 67.1326 65.5901

CAGE analysis