Hb_003656_170

Information

Type -
Description -
Location Contig3656: 146056-148191
Sequence    

Annotation

kegg
ID rcu:RCOM_1046180
description phenylalanine ammonia-lyase, putative (EC:4.3.1.24)
nr
ID XP_012077001.1
description PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
swissprot
ID P52777
description Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL PE=3 SV=1
trembl
ID A0A067KCD4
description Phenylalanine ammonia-lyase OS=Jatropha curcas GN=JCGZ_07452 PE=3 SV=1
Gene Ontology
ID GO:0005737
description phenylalanine ammonia-lyase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37650: 146119-146487 , PASA_asmbl_37652: 147092-147347 , PASA_asmbl_37653: 147378-147802 , PASA_asmbl_37654: 147996-148197
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003656_170 0.0 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
2 Hb_001123_170 0.0745303057 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002324_050 0.0821640553 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
4 Hb_002078_250 0.0991381077 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003964_010 0.1016373961 transcription factor TF Family: WRKY hypothetical protein POPTR_0008s09360g [Populus trichocarpa]
6 Hb_004306_140 0.1091147417 - - calcineurin-like phosphoesterase [Manihot esculenta]
7 Hb_050236_010 0.1130642952 - - hypothetical protein EUGRSUZ_E02960, partial [Eucalyptus grandis]
8 Hb_000391_060 0.1146246514 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
9 Hb_000477_110 0.1155275709 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
10 Hb_003025_150 0.1167029192 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004544_090 0.1196945075 - - cytochrome P450, putative [Ricinus communis]
12 Hb_023386_050 0.119830486 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001377_130 0.1211182461 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
14 Hb_014361_020 0.1225536418 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
15 Hb_000589_330 0.1230533386 - - kinase, putative [Ricinus communis]
16 Hb_006052_060 0.1236231178 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
17 Hb_002370_060 0.124286701 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Populus euphratica]
18 Hb_149484_010 0.1246592019 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor-like [Eucalyptus grandis]
19 Hb_004166_020 0.1253141494 - - -
20 Hb_007894_030 0.1253326537 - - calcium-dependent protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003656_170 Hb_003656_170 Hb_001123_170 Hb_001123_170 Hb_003656_170--Hb_001123_170 Hb_002324_050 Hb_002324_050 Hb_003656_170--Hb_002324_050 Hb_002078_250 Hb_002078_250 Hb_003656_170--Hb_002078_250 Hb_003964_010 Hb_003964_010 Hb_003656_170--Hb_003964_010 Hb_004306_140 Hb_004306_140 Hb_003656_170--Hb_004306_140 Hb_050236_010 Hb_050236_010 Hb_003656_170--Hb_050236_010 Hb_001377_130 Hb_001377_130 Hb_001123_170--Hb_001377_130 Hb_004544_090 Hb_004544_090 Hb_001123_170--Hb_004544_090 Hb_000382_030 Hb_000382_030 Hb_001123_170--Hb_000382_030 Hb_000477_110 Hb_000477_110 Hb_001123_170--Hb_000477_110 Hb_001123_170--Hb_002078_250 Hb_002324_040 Hb_002324_040 Hb_002324_050--Hb_002324_040 Hb_004032_250 Hb_004032_250 Hb_002324_050--Hb_004032_250 Hb_002324_050--Hb_003964_010 Hb_003025_150 Hb_003025_150 Hb_002324_050--Hb_003025_150 Hb_002324_050--Hb_001123_170 Hb_000411_050 Hb_000411_050 Hb_002078_250--Hb_000411_050 Hb_002078_250--Hb_003964_010 Hb_002078_250--Hb_004544_090 Hb_002078_250--Hb_003025_150 Hb_005649_010 Hb_005649_010 Hb_003964_010--Hb_005649_010 Hb_064985_010 Hb_064985_010 Hb_003964_010--Hb_064985_010 Hb_002343_020 Hb_002343_020 Hb_003964_010--Hb_002343_020 Hb_114310_050 Hb_114310_050 Hb_004306_140--Hb_114310_050 Hb_007894_030 Hb_007894_030 Hb_004306_140--Hb_007894_030 Hb_000589_240 Hb_000589_240 Hb_004306_140--Hb_000589_240 Hb_000614_190 Hb_000614_190 Hb_004306_140--Hb_000614_190 Hb_004306_140--Hb_000477_110 Hb_014361_020 Hb_014361_020 Hb_004306_140--Hb_014361_020 Hb_000116_290 Hb_000116_290 Hb_050236_010--Hb_000116_290 Hb_050236_010--Hb_004306_140 Hb_050236_010--Hb_002324_050 Hb_000976_340 Hb_000976_340 Hb_050236_010--Hb_000976_340 Hb_050236_010--Hb_001123_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0713028 5.64642 2.91662 3.92512 0.140769 0.0176397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0629561 0.0825614 0.125464 2.48171 1.85296

CAGE analysis