Hb_064985_010

Information

Type -
Description -
Location Contig64985: 1044-5018
Sequence    

Annotation

kegg
ID tcc:TCM_029610
description Leucine-rich repeat transmembrane protein kinase, putative
nr
ID XP_007025270.1
description Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
swissprot
ID C0LGE0
description Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1
trembl
ID A0A061GFF3
description Leucine-rich repeat transmembrane protein kinase, putative OS=Theobroma cacao GN=TCM_029610 PE=3 SV=1
Gene Ontology
ID GO:0004672
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52516: 1282-1653
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_064985_010 0.0 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
2 Hb_001008_110 0.0983650036 - - -
3 Hb_007894_030 0.1075895364 - - calcium-dependent protein kinase, putative [Ricinus communis]
4 Hb_006634_090 0.1085292726 - - PREDICTED: uncharacterized protein LOC105646581 [Jatropha curcas]
5 Hb_001636_010 0.1094141226 - - hypothetical protein JCGZ_01264 [Jatropha curcas]
6 Hb_000527_140 0.1095821327 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
7 Hb_005649_010 0.1137257106 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
8 Hb_025432_010 0.1139580748 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
9 Hb_003964_010 0.1142279868 transcription factor TF Family: WRKY hypothetical protein POPTR_0008s09360g [Populus trichocarpa]
10 Hb_002660_040 0.1150499509 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
11 Hb_001123_170 0.1189215933 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000417_280 0.1193357363 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006934_020 0.1196127835 - - hypothetical protein POPTR_0004s09051g [Populus trichocarpa]
14 Hb_004544_090 0.1220515989 - - cytochrome P450, putative [Ricinus communis]
15 Hb_010174_190 0.1222781622 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
16 Hb_042202_020 0.1246850738 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
17 Hb_006241_010 0.1250432772 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
18 Hb_005357_020 0.1258197353 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003142_060 0.1287027654 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
20 Hb_001377_130 0.1287075897 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_064985_010 Hb_064985_010 Hb_001008_110 Hb_001008_110 Hb_064985_010--Hb_001008_110 Hb_007894_030 Hb_007894_030 Hb_064985_010--Hb_007894_030 Hb_006634_090 Hb_006634_090 Hb_064985_010--Hb_006634_090 Hb_001636_010 Hb_001636_010 Hb_064985_010--Hb_001636_010 Hb_000527_140 Hb_000527_140 Hb_064985_010--Hb_000527_140 Hb_005649_010 Hb_005649_010 Hb_064985_010--Hb_005649_010 Hb_000417_280 Hb_000417_280 Hb_001008_110--Hb_000417_280 Hb_002833_020 Hb_002833_020 Hb_001008_110--Hb_002833_020 Hb_003142_060 Hb_003142_060 Hb_001008_110--Hb_003142_060 Hb_032717_010 Hb_032717_010 Hb_001008_110--Hb_032717_010 Hb_042202_020 Hb_042202_020 Hb_001008_110--Hb_042202_020 Hb_001369_070 Hb_001369_070 Hb_007894_030--Hb_001369_070 Hb_020285_010 Hb_020285_010 Hb_007894_030--Hb_020285_010 Hb_000497_100 Hb_000497_100 Hb_007894_030--Hb_000497_100 Hb_010417_100 Hb_010417_100 Hb_007894_030--Hb_010417_100 Hb_038777_010 Hb_038777_010 Hb_007894_030--Hb_038777_010 Hb_007894_030--Hb_001636_010 Hb_002450_180 Hb_002450_180 Hb_006634_090--Hb_002450_180 Hb_000739_160 Hb_000739_160 Hb_006634_090--Hb_000739_160 Hb_000847_050 Hb_000847_050 Hb_006634_090--Hb_000847_050 Hb_006634_090--Hb_010417_100 Hb_000096_210 Hb_000096_210 Hb_006634_090--Hb_000096_210 Hb_001636_010--Hb_010417_100 Hb_001636_010--Hb_020285_010 Hb_001421_010 Hb_001421_010 Hb_001636_010--Hb_001421_010 Hb_001636_010--Hb_038777_010 Hb_001894_040 Hb_001894_040 Hb_001636_010--Hb_001894_040 Hb_114684_010 Hb_114684_010 Hb_000527_140--Hb_114684_010 Hb_002660_040 Hb_002660_040 Hb_000527_140--Hb_002660_040 Hb_000527_140--Hb_042202_020 Hb_000527_140--Hb_001008_110 Hb_000847_020 Hb_000847_020 Hb_000527_140--Hb_000847_020 Hb_002343_020 Hb_002343_020 Hb_005649_010--Hb_002343_020 Hb_003964_010 Hb_003964_010 Hb_005649_010--Hb_003964_010 Hb_001377_130 Hb_001377_130 Hb_005649_010--Hb_001377_130 Hb_013938_010 Hb_013938_010 Hb_005649_010--Hb_013938_010 Hb_001318_110 Hb_001318_110 Hb_005649_010--Hb_001318_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.375474 12.6642 7.47311 8.31823 0.121554 0.305311
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.314216 0.144212 0.661571 11.9256 4.94243

CAGE analysis