Hb_005649_010

Information

Type -
Description -
Location Contig5649: 8379-10331
Sequence    

Annotation

kegg
ID rcu:RCOM_1025070
description protein binding protein, putative
nr
ID XP_012084824.1
description PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
swissprot
ID Q9FGH9
description Exocyst complex component EXO70B1 OS=Arabidopsis thaliana GN=EXO70B1 PE=1 SV=1
trembl
ID A0A067JTQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19941 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component exo70b1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48970: 10598-10699
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005649_010 0.0 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
2 Hb_002343_020 0.1088076153 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
3 Hb_003964_010 0.1117554009 transcription factor TF Family: WRKY hypothetical protein POPTR_0008s09360g [Populus trichocarpa]
4 Hb_064985_010 0.1137257106 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
5 Hb_001377_130 0.1159361185 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
6 Hb_013938_010 0.1261621478 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
7 Hb_001318_110 0.1308053885 - - PREDICTED: uncharacterized protein LOC105642677 [Jatropha curcas]
8 Hb_005628_050 0.1330706391 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
9 Hb_000382_030 0.1344218252 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
10 Hb_002078_250 0.1354382908 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004032_090 0.1364545021 - - PREDICTED: protein AIG1 [Jatropha curcas]
12 Hb_006634_090 0.1372217855 - - PREDICTED: uncharacterized protein LOC105646581 [Jatropha curcas]
13 Hb_168068_010 0.137712859 - - Disease resistance protein RFL1, putative [Ricinus communis]
14 Hb_043987_010 0.1385342671 - - glutathione s-transferase, putative [Ricinus communis]
15 Hb_001123_170 0.1389260251 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000009_300 0.1395535259 - - hypothetical protein CICLE_v10024731mg [Citrus clementina]
17 Hb_002030_180 0.1400902482 - - ring finger protein, putative [Ricinus communis]
18 Hb_002324_050 0.1401069081 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
19 Hb_000977_090 0.1401574613 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
20 Hb_029622_020 0.1407932341 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005649_010 Hb_005649_010 Hb_002343_020 Hb_002343_020 Hb_005649_010--Hb_002343_020 Hb_003964_010 Hb_003964_010 Hb_005649_010--Hb_003964_010 Hb_064985_010 Hb_064985_010 Hb_005649_010--Hb_064985_010 Hb_001377_130 Hb_001377_130 Hb_005649_010--Hb_001377_130 Hb_013938_010 Hb_013938_010 Hb_005649_010--Hb_013938_010 Hb_001318_110 Hb_001318_110 Hb_005649_010--Hb_001318_110 Hb_000402_030 Hb_000402_030 Hb_002343_020--Hb_000402_030 Hb_025236_020 Hb_025236_020 Hb_002343_020--Hb_025236_020 Hb_004032_090 Hb_004032_090 Hb_002343_020--Hb_004032_090 Hb_001123_170 Hb_001123_170 Hb_002343_020--Hb_001123_170 Hb_005375_070 Hb_005375_070 Hb_002343_020--Hb_005375_070 Hb_002078_250 Hb_002078_250 Hb_003964_010--Hb_002078_250 Hb_003656_170 Hb_003656_170 Hb_003964_010--Hb_003656_170 Hb_002324_050 Hb_002324_050 Hb_003964_010--Hb_002324_050 Hb_003964_010--Hb_064985_010 Hb_003964_010--Hb_002343_020 Hb_001008_110 Hb_001008_110 Hb_064985_010--Hb_001008_110 Hb_007894_030 Hb_007894_030 Hb_064985_010--Hb_007894_030 Hb_006634_090 Hb_006634_090 Hb_064985_010--Hb_006634_090 Hb_001636_010 Hb_001636_010 Hb_064985_010--Hb_001636_010 Hb_000527_140 Hb_000527_140 Hb_064985_010--Hb_000527_140 Hb_000382_030 Hb_000382_030 Hb_001377_130--Hb_000382_030 Hb_001377_130--Hb_001123_170 Hb_000237_070 Hb_000237_070 Hb_001377_130--Hb_000237_070 Hb_000318_050 Hb_000318_050 Hb_001377_130--Hb_000318_050 Hb_005628_050 Hb_005628_050 Hb_001377_130--Hb_005628_050 Hb_001538_050 Hb_001538_050 Hb_001377_130--Hb_001538_050 Hb_184008_010 Hb_184008_010 Hb_013938_010--Hb_184008_010 Hb_013938_010--Hb_003964_010 Hb_013938_010--Hb_001318_110 Hb_013938_010--Hb_002343_020 Hb_043987_010 Hb_043987_010 Hb_013938_010--Hb_043987_010 Hb_002641_050 Hb_002641_050 Hb_001318_110--Hb_002641_050 Hb_001832_240 Hb_001832_240 Hb_001318_110--Hb_001832_240 Hb_001318_110--Hb_005628_050 Hb_000031_160 Hb_000031_160 Hb_001318_110--Hb_000031_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.39071 14.2909 10.7158 8.38114 0.266332 0.183912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.787862 0.382884 0.380075 10.6944 2.88785

CAGE analysis