Hb_004032_090

Information

Type -
Description -
Location Contig4032: 116797-120930
Sequence    

Annotation

kegg
ID rcu:RCOM_1602690
description aig1, putative
nr
ID XP_012073509.1
description PREDICTED: protein AIG1 [Jatropha curcas]
swissprot
ID P54120
description Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1
trembl
ID A0A067KKF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07992 PE=4 SV=1
Gene Ontology
ID GO:0005525
description protein aig1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39987: 120458-120643 , PASA_asmbl_39988: 116817-120860 , PASA_asmbl_39989: 117578-117801
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_090 0.0 - - PREDICTED: protein AIG1 [Jatropha curcas]
2 Hb_000008_430 0.1046817556 - - PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1 [Jatropha curcas]
3 Hb_002343_020 0.1125990741 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
4 Hb_001123_190 0.1132958154 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
5 Hb_000009_150 0.1149887002 - - carbohydrate transporter, putative [Ricinus communis]
6 Hb_048476_040 0.1252825531 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
7 Hb_006052_060 0.1272699076 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
8 Hb_002804_010 0.1290260815 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
9 Hb_029622_020 0.1317690988 - - conserved hypothetical protein [Ricinus communis]
10 Hb_083078_010 0.1325476997 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
11 Hb_005375_070 0.1333256869 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
12 Hb_005288_050 0.1362749654 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
13 Hb_000329_790 0.1364187641 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
14 Hb_005649_010 0.1364545021 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
15 Hb_003964_010 0.1367970413 transcription factor TF Family: WRKY hypothetical protein POPTR_0008s09360g [Populus trichocarpa]
16 Hb_005539_100 0.1369079776 - - nucleoside transporter, putative [Ricinus communis]
17 Hb_003430_070 0.1370056422 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
18 Hb_001514_240 0.1373666407 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
19 Hb_110558_010 0.1383766681 - - PREDICTED: uncharacterized protein LOC105641877 [Jatropha curcas]
20 Hb_172676_010 0.1414899258 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]

Gene co-expression network

sample Hb_004032_090 Hb_004032_090 Hb_000008_430 Hb_000008_430 Hb_004032_090--Hb_000008_430 Hb_002343_020 Hb_002343_020 Hb_004032_090--Hb_002343_020 Hb_001123_190 Hb_001123_190 Hb_004032_090--Hb_001123_190 Hb_000009_150 Hb_000009_150 Hb_004032_090--Hb_000009_150 Hb_048476_040 Hb_048476_040 Hb_004032_090--Hb_048476_040 Hb_006052_060 Hb_006052_060 Hb_004032_090--Hb_006052_060 Hb_005724_050 Hb_005724_050 Hb_000008_430--Hb_005724_050 Hb_001294_040 Hb_001294_040 Hb_000008_430--Hb_001294_040 Hb_007290_070 Hb_007290_070 Hb_000008_430--Hb_007290_070 Hb_005539_100 Hb_005539_100 Hb_000008_430--Hb_005539_100 Hb_001205_180 Hb_001205_180 Hb_000008_430--Hb_001205_180 Hb_000402_030 Hb_000402_030 Hb_002343_020--Hb_000402_030 Hb_025236_020 Hb_025236_020 Hb_002343_020--Hb_025236_020 Hb_005649_010 Hb_005649_010 Hb_002343_020--Hb_005649_010 Hb_001123_170 Hb_001123_170 Hb_002343_020--Hb_001123_170 Hb_005375_070 Hb_005375_070 Hb_002343_020--Hb_005375_070 Hb_110558_010 Hb_110558_010 Hb_001123_190--Hb_110558_010 Hb_001123_190--Hb_048476_040 Hb_012366_050 Hb_012366_050 Hb_001123_190--Hb_012366_050 Hb_026698_020 Hb_026698_020 Hb_001123_190--Hb_026698_020 Hb_083078_010 Hb_083078_010 Hb_001123_190--Hb_083078_010 Hb_003430_070 Hb_003430_070 Hb_000009_150--Hb_003430_070 Hb_001433_160 Hb_001433_160 Hb_000009_150--Hb_001433_160 Hb_005080_020 Hb_005080_020 Hb_000009_150--Hb_005080_020 Hb_000329_790 Hb_000329_790 Hb_000009_150--Hb_000329_790 Hb_000009_150--Hb_048476_040 Hb_005064_070 Hb_005064_070 Hb_048476_040--Hb_005064_070 Hb_132840_020 Hb_132840_020 Hb_048476_040--Hb_132840_020 Hb_048476_040--Hb_000329_790 Hb_048476_040--Hb_005080_020 Hb_054865_050 Hb_054865_050 Hb_048476_040--Hb_054865_050 Hb_001294_050 Hb_001294_050 Hb_048476_040--Hb_001294_050 Hb_001619_160 Hb_001619_160 Hb_006052_060--Hb_001619_160 Hb_006052_060--Hb_003430_070 Hb_001318_140 Hb_001318_140 Hb_006052_060--Hb_001318_140 Hb_172676_010 Hb_172676_010 Hb_006052_060--Hb_172676_010 Hb_149484_010 Hb_149484_010 Hb_006052_060--Hb_149484_010 Hb_001242_190 Hb_001242_190 Hb_006052_060--Hb_001242_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.53162 230.713 170.05 110.073 15.1564 14.9242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8101 15.9052 11.4858 131.289 84.5511

CAGE analysis