Hb_005724_050

Information

Type -
Description -
Location Contig5724: 84870-85400
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005724_050 0.0 - - -
2 Hb_000008_430 0.0979597144 - - PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1 [Jatropha curcas]
3 Hb_001409_050 0.1004003851 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000732_230 0.1238281205 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
5 Hb_001205_180 0.1388740312 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
6 Hb_001951_240 0.1432023723 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
7 Hb_002609_190 0.1474752577 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
8 Hb_000649_300 0.1478747732 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
9 Hb_003050_150 0.1482006972 - - endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Ricinus communis]
10 Hb_115513_040 0.1494549241 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004800_130 0.1535823764 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
12 Hb_001053_200 0.1549804181 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
13 Hb_003216_050 0.1570090169 - - PREDICTED: OBERON-like protein [Jatropha curcas]
14 Hb_000120_310 0.158541974 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
15 Hb_005539_100 0.1594483293 - - nucleoside transporter, putative [Ricinus communis]
16 Hb_002874_170 0.1609603825 - - PREDICTED: L-arabinokinase-like isoform X3 [Jatropha curcas]
17 Hb_001133_090 0.1633578115 - - hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
18 Hb_007031_040 0.1634349532 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
19 Hb_002073_020 0.1634405587 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
20 Hb_001102_090 0.1637325355 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]

Gene co-expression network

sample Hb_005724_050 Hb_005724_050 Hb_000008_430 Hb_000008_430 Hb_005724_050--Hb_000008_430 Hb_001409_050 Hb_001409_050 Hb_005724_050--Hb_001409_050 Hb_000732_230 Hb_000732_230 Hb_005724_050--Hb_000732_230 Hb_001205_180 Hb_001205_180 Hb_005724_050--Hb_001205_180 Hb_001951_240 Hb_001951_240 Hb_005724_050--Hb_001951_240 Hb_002609_190 Hb_002609_190 Hb_005724_050--Hb_002609_190 Hb_004032_090 Hb_004032_090 Hb_000008_430--Hb_004032_090 Hb_001294_040 Hb_001294_040 Hb_000008_430--Hb_001294_040 Hb_007290_070 Hb_007290_070 Hb_000008_430--Hb_007290_070 Hb_005539_100 Hb_005539_100 Hb_000008_430--Hb_005539_100 Hb_000008_430--Hb_001205_180 Hb_001053_200 Hb_001053_200 Hb_001409_050--Hb_001053_200 Hb_003216_050 Hb_003216_050 Hb_001409_050--Hb_003216_050 Hb_001409_050--Hb_000732_230 Hb_001409_050--Hb_001951_240 Hb_001409_050--Hb_000008_430 Hb_000950_040 Hb_000950_040 Hb_000732_230--Hb_000950_040 Hb_115513_040 Hb_115513_040 Hb_000732_230--Hb_115513_040 Hb_001408_020 Hb_001408_020 Hb_000732_230--Hb_001408_020 Hb_000732_230--Hb_001951_240 Hb_000227_320 Hb_000227_320 Hb_000732_230--Hb_000227_320 Hb_003050_150 Hb_003050_150 Hb_000732_230--Hb_003050_150 Hb_004800_130 Hb_004800_130 Hb_001205_180--Hb_004800_130 Hb_001133_090 Hb_001133_090 Hb_001205_180--Hb_001133_090 Hb_002553_010 Hb_002553_010 Hb_001205_180--Hb_002553_010 Hb_010775_010 Hb_010775_010 Hb_001205_180--Hb_010775_010 Hb_001488_210 Hb_001488_210 Hb_001205_180--Hb_001488_210 Hb_083078_010 Hb_083078_010 Hb_001205_180--Hb_083078_010 Hb_172421_010 Hb_172421_010 Hb_001951_240--Hb_172421_010 Hb_001951_240--Hb_001053_200 Hb_000649_300 Hb_000649_300 Hb_001951_240--Hb_000649_300 Hb_002804_010 Hb_002804_010 Hb_001951_240--Hb_002804_010 Hb_002073_020 Hb_002073_020 Hb_001951_240--Hb_002073_020 Hb_002609_190--Hb_001133_090 Hb_012305_140 Hb_012305_140 Hb_002609_190--Hb_012305_140 Hb_002609_190--Hb_004800_130 Hb_007031_040 Hb_007031_040 Hb_002609_190--Hb_007031_040 Hb_002259_110 Hb_002259_110 Hb_002609_190--Hb_002259_110 Hb_002609_190--Hb_001205_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.26877 11.8889 9.48008 5.83425 2.67435 1.71981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.4872 0.0956994 0.164033 6.13455 2.89906

CAGE analysis