Hb_003050_150

Information

Type -
Description -
Location Contig3050: 157492-167040
Sequence    

Annotation

kegg
ID rcu:RCOM_0632950
description endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative (EC:3.2.1.113)
nr
ID XP_002519694.1
description endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Ricinus communis]
swissprot
ID Q93Y37
description Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 OS=Arabidopsis thaliana GN=MNS3 PE=2 SV=1
trembl
ID B9S125
description alpha-1,2-Mannosidase OS=Ricinus communis GN=RCOM_0632950 PE=3 SV=1
Gene Ontology
ID GO:0005768
description mannosyl-oligosaccharide -alpha-mannosidase mns3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32138: 158786-164859 , PASA_asmbl_32141: 165474-166966 , PASA_asmbl_32142: 165685-166724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_150 0.0 - - endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Ricinus communis]
2 Hb_000732_230 0.1006505794 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
3 Hb_001205_180 0.1045957627 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
4 Hb_115513_040 0.1089929662 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004800_130 0.1118573536 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
6 Hb_002025_270 0.1161836522 - - PREDICTED: uncharacterized protein At4g15970 isoform X1 [Jatropha curcas]
7 Hb_002553_010 0.1163144466 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 2-like [Populus euphratica]
8 Hb_000665_260 0.1165268723 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
9 Hb_000401_010 0.1166108144 - - SAB, putative [Ricinus communis]
10 Hb_000248_100 0.1173094602 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
11 Hb_000227_320 0.1192690052 - - unnamed protein product [Vitis vinifera]
12 Hb_005288_050 0.1210193849 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
13 Hb_000950_040 0.1248844736 - - cation-transporting atpase plant, putative [Ricinus communis]
14 Hb_002316_170 0.124976126 - - purine permease, putative [Ricinus communis]
15 Hb_000133_090 0.1265562409 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
16 Hb_003964_110 0.1266103311 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
17 Hb_083078_010 0.1276510125 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
18 Hb_001369_160 0.1283761948 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
19 Hb_001408_020 0.1304337363 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
20 Hb_158845_060 0.1308323634 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003050_150 Hb_003050_150 Hb_000732_230 Hb_000732_230 Hb_003050_150--Hb_000732_230 Hb_001205_180 Hb_001205_180 Hb_003050_150--Hb_001205_180 Hb_115513_040 Hb_115513_040 Hb_003050_150--Hb_115513_040 Hb_004800_130 Hb_004800_130 Hb_003050_150--Hb_004800_130 Hb_002025_270 Hb_002025_270 Hb_003050_150--Hb_002025_270 Hb_002553_010 Hb_002553_010 Hb_003050_150--Hb_002553_010 Hb_000950_040 Hb_000950_040 Hb_000732_230--Hb_000950_040 Hb_000732_230--Hb_115513_040 Hb_001408_020 Hb_001408_020 Hb_000732_230--Hb_001408_020 Hb_001951_240 Hb_001951_240 Hb_000732_230--Hb_001951_240 Hb_000227_320 Hb_000227_320 Hb_000732_230--Hb_000227_320 Hb_001205_180--Hb_004800_130 Hb_001133_090 Hb_001133_090 Hb_001205_180--Hb_001133_090 Hb_001205_180--Hb_002553_010 Hb_010775_010 Hb_010775_010 Hb_001205_180--Hb_010775_010 Hb_001488_210 Hb_001488_210 Hb_001205_180--Hb_001488_210 Hb_083078_010 Hb_083078_010 Hb_001205_180--Hb_083078_010 Hb_115513_040--Hb_083078_010 Hb_115513_040--Hb_000227_320 Hb_115513_040--Hb_000950_040 Hb_115513_040--Hb_001205_180 Hb_004800_130--Hb_001133_090 Hb_004800_130--Hb_002553_010 Hb_004800_130--Hb_010775_010 Hb_006794_020 Hb_006794_020 Hb_004800_130--Hb_006794_020 Hb_159295_010 Hb_159295_010 Hb_004800_130--Hb_159295_010 Hb_005298_020 Hb_005298_020 Hb_002025_270--Hb_005298_020 Hb_001646_010 Hb_001646_010 Hb_002025_270--Hb_001646_010 Hb_005772_030 Hb_005772_030 Hb_002025_270--Hb_005772_030 Hb_024758_020 Hb_024758_020 Hb_002025_270--Hb_024758_020 Hb_002809_160 Hb_002809_160 Hb_002025_270--Hb_002809_160 Hb_002259_110 Hb_002259_110 Hb_002553_010--Hb_002259_110 Hb_152910_010 Hb_152910_010 Hb_002553_010--Hb_152910_010 Hb_002553_010--Hb_001488_210 Hb_000856_300 Hb_000856_300 Hb_002553_010--Hb_000856_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.18762 6.80199 5.2936 5.28639 2.46094 2.20065
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.622639 0.794518 0.227404 5.69306 3.09929

CAGE analysis