Hb_115513_040

Information

Type -
Description -
Location Contig115513: 29655-33041
Sequence    

Annotation

kegg
ID rcu:RCOM_0484190
description hypothetical protein
nr
ID XP_002531270.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8GYX9
description Protein WVD2-like 1 OS=Arabidopsis thaliana GN=WDL1 PE=1 SV=1
trembl
ID B9SZ51
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0484190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04682: 29748-32128 , PASA_asmbl_04683: 28124-33027
cDNA
(Sanger)
(ID:Location)		 015_G03.ab1: 29748-31708

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115513_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000732_230 0.0834254814 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
3 Hb_083078_010 0.0930209572 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
4 Hb_000227_320 0.095569841 - - unnamed protein product [Vitis vinifera]
5 Hb_000950_040 0.0971574675 - - cation-transporting atpase plant, putative [Ricinus communis]
6 Hb_003050_150 0.1089929662 - - endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Ricinus communis]
7 Hb_001205_180 0.1092857386 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
8 Hb_001408_020 0.1174232841 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
9 Hb_000120_310 0.1176454706 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
10 Hb_052117_010 0.1177645057 - - kinase, putative [Ricinus communis]
11 Hb_001522_040 0.1213376511 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_000072_020 0.1224984557 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
13 Hb_004800_130 0.12503725 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
14 Hb_001369_160 0.1263027005 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
15 Hb_000133_090 0.1288710176 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
16 Hb_005288_050 0.1299676158 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
17 Hb_033363_010 0.1303548359 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
18 Hb_002316_170 0.1314707182 - - purine permease, putative [Ricinus communis]
19 Hb_002833_020 0.1327435151 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
20 Hb_006794_020 0.1327623091 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]

Gene co-expression network

sample Hb_115513_040 Hb_115513_040 Hb_000732_230 Hb_000732_230 Hb_115513_040--Hb_000732_230 Hb_083078_010 Hb_083078_010 Hb_115513_040--Hb_083078_010 Hb_000227_320 Hb_000227_320 Hb_115513_040--Hb_000227_320 Hb_000950_040 Hb_000950_040 Hb_115513_040--Hb_000950_040 Hb_003050_150 Hb_003050_150 Hb_115513_040--Hb_003050_150 Hb_001205_180 Hb_001205_180 Hb_115513_040--Hb_001205_180 Hb_000732_230--Hb_000950_040 Hb_001408_020 Hb_001408_020 Hb_000732_230--Hb_001408_020 Hb_001951_240 Hb_001951_240 Hb_000732_230--Hb_001951_240 Hb_000732_230--Hb_000227_320 Hb_000732_230--Hb_003050_150 Hb_007290_070 Hb_007290_070 Hb_083078_010--Hb_007290_070 Hb_083078_010--Hb_000227_320 Hb_083078_010--Hb_001205_180 Hb_004096_220 Hb_004096_220 Hb_083078_010--Hb_004096_220 Hb_005288_050 Hb_005288_050 Hb_083078_010--Hb_005288_050 Hb_003964_110 Hb_003964_110 Hb_000227_320--Hb_003964_110 Hb_000665_260 Hb_000665_260 Hb_000227_320--Hb_000665_260 Hb_000072_020 Hb_000072_020 Hb_000227_320--Hb_000072_020 Hb_033363_010 Hb_033363_010 Hb_000227_320--Hb_033363_010 Hb_000227_320--Hb_000950_040 Hb_006949_060 Hb_006949_060 Hb_000227_320--Hb_006949_060 Hb_052117_010 Hb_052117_010 Hb_000950_040--Hb_052117_010 Hb_000196_010 Hb_000196_010 Hb_000950_040--Hb_000196_010 Hb_000950_040--Hb_006949_060 Hb_003050_150--Hb_001205_180 Hb_004800_130 Hb_004800_130 Hb_003050_150--Hb_004800_130 Hb_002025_270 Hb_002025_270 Hb_003050_150--Hb_002025_270 Hb_002553_010 Hb_002553_010 Hb_003050_150--Hb_002553_010 Hb_001205_180--Hb_004800_130 Hb_001133_090 Hb_001133_090 Hb_001205_180--Hb_001133_090 Hb_001205_180--Hb_002553_010 Hb_010775_010 Hb_010775_010 Hb_001205_180--Hb_010775_010 Hb_001488_210 Hb_001488_210 Hb_001205_180--Hb_001488_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.42862 36.8206 24.4937 24.1375 7.30074 5.17079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.69829 2.14722 0.962926 28.4471 20.8833

CAGE analysis