Hb_001205_180

Information

Type -
Description -
Location Contig1205: 123747-129149
Sequence    

Annotation

kegg
ID pop:POPTR_0005s12580g
description hypothetical protein
nr
ID XP_006383218.1
description hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
swissprot
ID Q42404
description U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1
trembl
ID U5GC46
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s12580g PE=4 SV=1
Gene Ontology
ID GO:0019013
description u1 small nuclear ribonucleoprotein 70 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06341: 123788-126080 , PASA_asmbl_06343: 127425-128916
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001205_180 0.0 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
2 Hb_004800_130 0.048835388 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
3 Hb_001133_090 0.0897903649 - - hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
4 Hb_002553_010 0.0915594921 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 2-like [Populus euphratica]
5 Hb_010775_010 0.0936997406 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
6 Hb_001488_210 0.0999673393 - - PREDICTED: protein RIK [Jatropha curcas]
7 Hb_083078_010 0.1002928655 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
8 Hb_003050_150 0.1045957627 - - endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Ricinus communis]
9 Hb_006794_020 0.1077240223 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
10 Hb_115513_040 0.1092857386 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000665_260 0.1098229308 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
12 Hb_002259_110 0.110248712 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
13 Hb_002609_190 0.1179642141 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
14 Hb_000732_230 0.1188768458 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
15 Hb_000270_700 0.1195995263 - - PREDICTED: protease Do-like 9 [Populus euphratica]
16 Hb_005885_030 0.1197024147 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
17 Hb_000227_320 0.1211541837 - - unnamed protein product [Vitis vinifera]
18 Hb_002025_270 0.1213760281 - - PREDICTED: uncharacterized protein At4g15970 isoform X1 [Jatropha curcas]
19 Hb_007031_040 0.12284323 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
20 Hb_005288_050 0.1232866487 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]

Gene co-expression network

sample Hb_001205_180 Hb_001205_180 Hb_004800_130 Hb_004800_130 Hb_001205_180--Hb_004800_130 Hb_001133_090 Hb_001133_090 Hb_001205_180--Hb_001133_090 Hb_002553_010 Hb_002553_010 Hb_001205_180--Hb_002553_010 Hb_010775_010 Hb_010775_010 Hb_001205_180--Hb_010775_010 Hb_001488_210 Hb_001488_210 Hb_001205_180--Hb_001488_210 Hb_083078_010 Hb_083078_010 Hb_001205_180--Hb_083078_010 Hb_004800_130--Hb_001133_090 Hb_004800_130--Hb_002553_010 Hb_004800_130--Hb_010775_010 Hb_006794_020 Hb_006794_020 Hb_004800_130--Hb_006794_020 Hb_159295_010 Hb_159295_010 Hb_004800_130--Hb_159295_010 Hb_000421_110 Hb_000421_110 Hb_001133_090--Hb_000421_110 Hb_000418_050 Hb_000418_050 Hb_001133_090--Hb_000418_050 Hb_007031_040 Hb_007031_040 Hb_001133_090--Hb_007031_040 Hb_005885_030 Hb_005885_030 Hb_001133_090--Hb_005885_030 Hb_000270_700 Hb_000270_700 Hb_001133_090--Hb_000270_700 Hb_001133_090--Hb_010775_010 Hb_002259_110 Hb_002259_110 Hb_002553_010--Hb_002259_110 Hb_152910_010 Hb_152910_010 Hb_002553_010--Hb_152910_010 Hb_002553_010--Hb_001488_210 Hb_000856_300 Hb_000856_300 Hb_002553_010--Hb_000856_300 Hb_010775_010--Hb_005885_030 Hb_013358_060 Hb_013358_060 Hb_010775_010--Hb_013358_060 Hb_010775_010--Hb_006794_020 Hb_010775_010--Hb_001488_210 Hb_002686_410 Hb_002686_410 Hb_010775_010--Hb_002686_410 Hb_000300_250 Hb_000300_250 Hb_001488_210--Hb_000300_250 Hb_001488_210--Hb_002686_410 Hb_003216_060 Hb_003216_060 Hb_001488_210--Hb_003216_060 Hb_000453_230 Hb_000453_230 Hb_001488_210--Hb_000453_230 Hb_007290_070 Hb_007290_070 Hb_083078_010--Hb_007290_070 Hb_115513_040 Hb_115513_040 Hb_083078_010--Hb_115513_040 Hb_000227_320 Hb_000227_320 Hb_083078_010--Hb_000227_320 Hb_004096_220 Hb_004096_220 Hb_083078_010--Hb_004096_220 Hb_005288_050 Hb_005288_050 Hb_083078_010--Hb_005288_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.80593 39.2925 33.2962 18.1256 12.6348 7.31294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.71195 2.76917 2.48645 29.0668 17.9155

CAGE analysis